Locus 1772

Sequence ID 2L_DroMel_CAF1
Location 4,844,055 – 4,844,149
Length 94
Max. P 0.515513
window2846

overview

Window 6

Location 4,844,055 – 4,844,149
Length 94
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -20.67
Consensus MFE -16.25
Energy contribution -16.25
Covariance contribution 0.00
Combinations/Pair 1.26
Mean z-score -0.60
Structure conservation index 0.79
SVM decision value -0.04
SVM RNA-class probability 0.515513
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4844055 94 - 22407834
UCAAUU--------GUG-AAAUUUGUUAAAUCCCCUGCGAUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCAUCCAU
......--------.((-(((((.((..........))))))))).((..((((((((((.(((...(((.....)))..))).).)))))..))))..)).. ( -19.20)
>DroVir_CAF1 8255 93 - 1
UAUAUUUGCUUUAAUU-CUAAUACG--AAUC-------ACAUUGCAGGUGGCCAAACUCGUCUUGGACGACUAUUUCAGCAGCUCUGAGUUCUUGGCUUCCAU
......(((....(((-(......)--))).-------.....)))((.((((((..(((((...)))))....(((((.....)))))...)))))).)).. ( -20.80)
>DroSec_CAF1 7485 94 - 1
UCAAUU--------UUG-AAAUUCGUUAAAUCCCCUGGGCUCUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCCUCCAU
......--------...-.............((....)).......((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. ( -21.20)
>DroSim_CAF1 7563 94 - 1
UCAAUU--------UUG-AAAUUCGUUAAAUCCCCUGGGCUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUUAGCAGCUCGGAGUUUCUGGCCUCCAU
......--------(((-(((((((..........)))).))))))((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. ( -22.60)
>DroEre_CAF1 7800 94 - 1
UCAACU--------UUG-AAAUCCAUUAAAUCCUCUGUGCUUUCAAGGUGGCCAAACUUGUGCUUGAUGACUACUUCAGCAGCUCGGAAUUUCUGGCCUCCAU
...(((--------(((-(((..(((..........))).)))))))))(((((...(((.(((...(((.....)))..))).)))......)))))..... ( -19.90)
>DroAna_CAF1 8330 93 - 1
UCCUUU---G-UAUCUA-UAAUUUAUGAAUUUAUG-----UGUCCAGGUGGCCAAGCUCGUCCUGGAUGACUAUUUCAGCAGCUCGGAGUUCUUGGCUUCCAU
.....(---(-.((.((-(((.........)))))-----.)).))((.(((((((..(.(((.((.((.((.....)))).)).))))..))))))).)).. ( -20.30)
>consensus
UCAAUU________UUG_AAAUUCGUUAAAUCCCCUG_GCUUUCAAGGUGGCCAAACUCGUGCUCGAUGACUAUUUCAGCAGCUCGGAGUUUCUGGCCUCCAU
..............................................((.(((((((((((.(((...(((.....)))..))).).)))))..))))).)).. (-16.25 = -16.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:47 2006