Locus 1771

Sequence ID 2L_DroMel_CAF1
Location 4,839,236 – 4,839,328
Length 92
Max. P 0.537111
window2845

overview

Window 5

Location 4,839,236 – 4,839,328
Length 92
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 89.10
Mean single sequence MFE -17.43
Consensus MFE -13.88
Energy contribution -13.80
Covariance contribution -0.08
Combinations/Pair 1.29
Mean z-score -2.11
Structure conservation index 0.80
SVM decision value 0.01
SVM RNA-class probability 0.537111
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4839236 92 + 22407834
AUUACCAUCGCACA-ACUCAAAUUUCCCGUCAACCCUCCAUCAUUCUGUCAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU
....((.((((...-............(((..((.............))..)))....((((((....))))))))))))............. ( -16.12)
>DroSec_CAF1 2690 92 + 1
AUUACCAUCGCACA-ACUAAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGACAAUUAUGUCACGCGAGGAGCGCAAACCCAU
....((.((((...-.......((((..((((..............))))...)))).((((((....))))))))))))............. ( -18.94)
>DroSim_CAF1 2761 92 + 1
AUUACCAUCGCACA-ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGACAAUAAUGUCACGCGAGGAGCGCAAACCCAU
....((.((((...-.......((((..((((..............))))...)))).((((((....))))))))))))............. ( -18.94)
>DroEre_CAF1 2722 92 + 1
AUUACCAUCACAUA-ACUCAAAUUUCCCGUCACUCCUCUAUCAUUCUGACAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU
..............-.............(.(.((((((.....(((.......)))..((((((....))))))..)))))).))........ ( -17.60)
>DroYak_CAF1 2740 92 + 1
AUUACCAUCGCACA-ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAUAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU
..............-.............(.(.(((((((...((((.......)))).((((((....))))))).)))))).))........ ( -18.60)
>DroAna_CAF1 2776 87 + 1
AUUACCAUCGCACAAACUCAAAUUUCCUGUCAUUCCU--GUCACCUUGUCACCGGGACGAGCC----AUGUCACGCGAGGAACGCAAACCCAU
....((.((((................((.((....)--).)).((((((.....))))))..----.......))))))............. ( -14.40)
>consensus
AUUACCAUCGCACA_ACUCAAAUUUCCCGUCACUCCUCCAUCAUUCUGACAACGAAAAGUGGCAAUAAUGUCACGCGAGGAGCGCAAACCCAU
............................(.(.((((((.....(((.......)))..((((((....))))))..)))))).))........ (-13.88 = -13.80 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:46 2006