Locus 177

Sequence ID 2L_DroMel_CAF1
Location 552,223 – 552,313
Length 90
Max. P 0.553283
window267

overview

Window 7

Location 552,223 – 552,313
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 96.30
Mean single sequence MFE -31.75
Consensus MFE -30.89
Energy contribution -30.70
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.43
Structure conservation index 0.97
SVM decision value 0.04
SVM RNA-class probability 0.553283
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 552223 90 + 22407834
AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCGGCAGGCUUUCCACGUGCCGCAAAUCGCGGAA
......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -30.30)
>DroSec_CAF1 6572 90 + 1
AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGACAGCGGCAGGCUUUCCACGUGCCGCAAAUCGCGGAA
......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -30.30)
>DroEre_CAF1 6682 90 + 1
AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCUGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA
......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. ( -32.50)
>DroYak_CAF1 6656 90 + 1
AUGAUUCACCCGAGAUAGUCGGGGUGUUUCACCUGCUGACCGGACAAGUGGAGUCCGCUGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA
.(((..(((((..(.....).)))))..))).((((.((.(((.((.((((((.((......))..)))))).)))))....)))))).. ( -33.90)
>consensus
AUGAUUCACCCGAGAUAGUCAGGGUAUUUCACCUGCUGACCGGACAAGUGGAGUCAGCGGCAGGCUCUCCACGUGCCGCAAAUCGCGGAA
......((((((.(.(((.((((........))))))).))))....((((((..(((.....))))))))))))((((.....)))).. (-30.89 = -30.70 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:02 2006