Locus 1768

Sequence ID 2L_DroMel_CAF1
Location 4,835,502 – 4,835,597
Length 95
Max. P 0.708915
window2842

overview

Window 2

Location 4,835,502 – 4,835,597
Length 95
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 84.30
Mean single sequence MFE -28.57
Consensus MFE -21.82
Energy contribution -22.51
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.76
SVM decision value 0.37
SVM RNA-class probability 0.708915
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4835502 95 + 22407834
AGAUAUAGCCACUCU--AUAGUCUAUAUAUAUAUAGUCAUGCCCAUUCCGAAUAGGGCGUUGUGUUGGUGGUGGUGGUGGCGGUGGCGUUGUCGACU
.((((..((((((((--((...((((....(((((...((((((..........))))))))))).....))))..)))).))))))..)))).... ( -29.40)
>DroSec_CAF1 4570 92 + 1
AGAUAUAGCCACUCUCUAUAUUCUA--UAUAUAUAGUCAUGCCCAUUCCGAAUAGGGCGUUGUGUUGGUGG---UGGUGGCGGUGGCGGUGUCGACU
.(((((.(((((.(.((((...(((--(..(((((...((((((..........)))))))))))..))))---..)))).)))))).))))).... ( -31.00)
>DroSim_CAF1 4581 92 + 1
AGAUAUAGCCACUCUCUAUAGUCUA--UAUAUAUAGUCAUGCCCAUUCCGAAUAGGGCGUUGUGUUGGUGG---UGGUGGCGGUGGCGUUGUCGACU
.((((..(((((.(.((((...(((--(..(((((...((((((..........)))))))))))..))))---..)))).))))))..)))).... ( -28.90)
>DroYak_CAF1 4706 76 + 1
AGAUAUAGCCACUCUAU-------G--UAUAUAUAGUCAUGCCCGUUCCGAAUGGGGCGUUGUGGUGGU------------GGUGGCGGUGUCGACU
.(((((.((((((((((-------(--(((........)))).((((((....)))))).....)))).------------)))))).))))).... ( -25.00)
>consensus
AGAUAUAGCCACUCUCUAUAGUCUA__UAUAUAUAGUCAUGCCCAUUCCGAAUAGGGCGUUGUGUUGGUGG___UGGUGGCGGUGGCGGUGUCGACU
.(((((.((((((.........(((...(((((.....((((((..........)))))))))))...)))..........)))))).))))).... (-21.82 = -22.51 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:42 2006