Locus 1763

Sequence ID 2L_DroMel_CAF1
Location 4,823,200 – 4,823,295
Length 95
Max. P 0.687629
window2835

overview

Window 5

Location 4,823,200 – 4,823,295
Length 95
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 86.75
Mean single sequence MFE -27.08
Consensus MFE -20.16
Energy contribution -20.40
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.76
Structure conservation index 0.74
SVM decision value 0.32
SVM RNA-class probability 0.687629
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4823200 95 + 22407834
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGAUA
....(((((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))........))).. ( -26.30)
>DroSec_CAF1 9739 93 + 1
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA--
.......((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))...........-- ( -26.00)
>DroSim_CAF1 9896 93 + 1
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU-----------------UGUGGCGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA--
.......((((((((..((((((........))))))....)).))-----------------))))((((((((.(((((.....)))))))))))))...........-- ( -27.90)
>DroEre_CAF1 9814 110 + 1
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCACUUCGCAGGCGAACGAAAUUGAGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGGAUCGUAUCUGA--
....(((.....((((.......(((((.((.(((((...(((.....))).))))).)).)))))..(((((((.(((((.....)))))))))))))))).....)))-- ( -26.20)
>DroYak_CAF1 10061 110 + 1
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCACUUCACAGGCAAAAGAAAUCGCGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGGAUCGUAUCUGA--
..................((((.......((((((((..(((.....)))..))))))))....(((((((((((.(((((.....)))))))))))..))))).)))).-- ( -29.00)
>consensus
AAAUUCACACAAGGUCAACGGAAUUAAUAUUUUUUGUAAGUGCAUU_________________UGUGGUGGGGAACUGUGCCCUAUGCACAUUCCUCGCAUCGUAUCUGA__
...........(((((.((((((........))))))..............................((((((((.(((((.....)))))))))))))...).)))).... (-20.16 = -20.40 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:36 2006