Locus 176

Sequence ID 2L_DroMel_CAF1
Location 549,859 – 549,957
Length 98
Max. P 0.582668
window266

overview

Window 6

Location 549,859 – 549,957
Length 98
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 74.58
Mean single sequence MFE -16.48
Consensus MFE -0.31
Energy contribution -1.11
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.02
SVM decision value 0.10
SVM RNA-class probability 0.582668
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 549859 98 - 22407834
CUUGAGGAACAUACCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAAAACUCGGAUAUAU----UUCCCCACGCAAACAGAAUAC-----------UUUUCUGGUUCCAUCAUC
..((((((((........((((.(((.......))).))))..........(((.....----.))).........(((((...-----------..)))))))))).))).. ( -17.90)
>DroSec_CAF1 4172 102 - 1
CUUGAAGAACACGUCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAGAACUCGGAUAUAUGUACUUUCCCACGCAAACAGAAUAC-----------UUUUCUGGUUCCAUCAUC
..(((.((((.(((.((((....))))(((((((((...(((.........))))))))).))).....)))....(((((...-----------..)))))))))..))).. ( -15.90)
>DroSim_CAF1 4484 102 - 1
CUUGAAGAACGCGUCAAUGAAACCAUUAGUCAUAUGAUUUUCCAAGAACUCGGAUAUAUGUACUUUCCCACGCAAACAGAAUAC-----------UUUUCUGCUUCCAUCAUC
...((((...((((.((((....))))(((((((((....(((........))))))))).))).....))))...(((((...-----------..)))))))))....... ( -18.90)
>DroEre_CAF1 4283 105 - 1
CUUGAUCUACG--CAACUGAAACCAUUAGUCACGAUGUUUCCCAAGAACUCGUAUAUAU----UUCCCCAAGCAAACAGAAUUGUUUGAAAAAUAUUUUCUGUUUCCAUCG--
...(((....(--(.(((((.....))))).((((.((((.....))))))))......----........))((((((((....((....))....))))))))..))).-- ( -16.50)
>DroYak_CAF1 4249 99 - 1
CUUGAUGUUCA--UAAAUGAAAGCAUUAGUCACGUUGUUUCUCAAGAACUCGGAUAUAU----UUCACCACGCAAACAAAAUUGUUUGAAA-AUACUU-----UUCCAUCU--
...((((....--....(((((......(((.((..((((.....)))).)))))...)----)))).....((((((....))))))...-......-----...)))).-- ( -13.20)
>consensus
CUUGAAGAACA__UCAAUGAAACCAUUAGUCAUAUGAUUUCCCAAGAACUCGGAUAUAU____UUCCCCACGCAAACAGAAUAC___________UUUUCUGGUUCCAUCAUC
............................................................................(((((................)))))........... ( -0.31 =  -1.11 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:01 2006