| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,810,169 – 4,810,267 |
| Length | 98 |
| Max. P | 0.642980 |
| Location | 4,810,169 – 4,810,267 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.57 |
| Mean single sequence MFE | -37.97 |
| Consensus MFE | -16.13 |
| Energy contribution | -15.05 |
| Covariance contribution | -1.08 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.642980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4810169 98 - 22407834 ---------UCAUGCUGUGUGCGAGCGGGACGGCUGUACUGUAGCCGGCAUUUUUGUGAUGCGCAAGAGCAGGAUGGCAAGAG-----UGCGGUCAUAUCUGUGCGGAGGUU ---------.....((.((..(((....((((((((.....))))).((((((((((.((.(((....)).).)).)))))))-----))).)))...)).)..)).))... ( -35.40) >DroVir_CAF1 16828 89 - 1 ---------GU----------AGAGCAGCACAGCUAUACUGUGCGCUGCAGUCGCUGCCUGUGCUAGAGCGAGCUGGCAAUAGCAACAUGCGCGCUUG-CUGCG---UGGUU ---------..----------...(((((((((.....))))((((.(((((.((((....((((((......)))))).)))).)).)))))))..)-)))).---..... ( -35.80) >DroSec_CAF1 12824 98 - 1 ---------UCAUGCUUGGUGCGAGCAGGAUGGCUAUACUGUAGCCGGCAUAUUUGUAAUGUGCGAGAGCAGGAUGACAAUAG-----UGCGGGCAUAGCUGUGAGCAGGUU ---------((.((((((...)))))).))..((((((((((.(((.((((..((((..(.(((....))).)...))))..)-----))).))))))).))).)))..... ( -33.70) >DroSim_CAF1 10320 98 - 1 ---------GCAUGCUGGGUGCGAGCGGGACGGCUAUACUGUAGCCGGCGUUUUUGUAAUGCGCGAGAGCAGGAUGGCAAGAG-----UGCGGGCAUAGCUGAGAGCAGGUU ---------((((.....))))..((....(((((((......(((.((((((((((.((.(((....)).).)).)))))))-----))).))))))))))...))..... ( -34.10) >DroEre_CAF1 12884 107 - 1 UUCUUUGGCUCUUGCUGGGUGGGAGCGGGAUGGCUGUACUGCAGCCGGCGUUUUUGUCAUGCGCGAGAGCAGGAUGGCAAGAG-----UGCGGGCAUAGCUGUGUGCAGGUU ...(((.(((((..(...)..))))).)))...((((((.((.(((.(((((((((((((.(((....)).).))))))))))-----))).)))...))...))))))... ( -47.90) >DroYak_CAF1 13357 107 - 1 UUCUUUGGCUCUGGUUGGGUGCGAGCGGGACGGCUGUACUGCAGCCGGCGUUUUUAUCAGGCGCGAGAGCAGGAUGGCAAGAG-----UGCGGGCAUAGCCGAGCGCUGGUU .(((...(((((.((..((((.(((((...((((((.....)))))).))))).))))....)).))))).))).......((-----(((.(((...)))..))))).... ( -40.90) >consensus _________UCAUGCUGGGUGCGAGCGGGACGGCUAUACUGUAGCCGGCAUUUUUGUCAUGCGCGAGAGCAGGAUGGCAAGAG_____UGCGGGCAUAGCUGUGAGCAGGUU ..............................(((((((.(((((....((((.......))))((....))..................)))))..))))))).......... (-16.13 = -15.05 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:25 2006