Locus 1751

Sequence ID 2L_DroMel_CAF1
Location 4,788,275 – 4,788,372
Length 97
Max. P 0.799941
window2811

overview

Window 1

Location 4,788,275 – 4,788,372
Length 97
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 83.80
Mean single sequence MFE -32.38
Consensus MFE -26.67
Energy contribution -26.77
Covariance contribution 0.10
Combinations/Pair 1.19
Mean z-score -1.99
Structure conservation index 0.82
SVM decision value 0.61
SVM RNA-class probability 0.799941
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4788275 97 + 22407834
UGUGGAUGUGGGCGUGCCUCGGUCGGGUCAUGCGGCAUUAUGUGGUGCAUUUUUUAUGAG-----------UCGCUC--UGCCUUU----UAUCACAUGUGCAUACACAU------AAGU
((((.(((((((((((.(((....))).)))))((((....((((..(((.....)))..-----------))))..--))))...----..)))))).)))).......------.... ( -30.40)
>DroPse_CAF1 266770 99 + 1
----CAUGUGGGCGUGCCUCGGCCGGGUCAGGCGGCAUUAUGUGGUGCAUUUUUUAUGAG-----------UCGCUC--UGCCUUU----UAUCACAUAUGCAUACACAUGCCCGUAAGU
----.....(((((((((...(((......)))))))).(((((((((((.....(((((-----------..((..--.))..))----))).....)))))).)))))))))...... ( -32.30)
>DroSim_CAF1 213700 95 + 1
UA--UAUGUGGGCGUGCCUCGGUCGGGUCAUGCGGCAUUAUGUGGUGCAUUUUUUAUGAG-----------UCGCUC--UGCCUUU----UAUCACAUGUGCAUACACAU------AAGU
((--((((((((((((.(((....))).)))))((((....((((..(((.....)))..-----------))))..--))))...----..))))))))).........------.... ( -29.00)
>DroWil_CAF1 233546 116 + 1
----UGUGUGGGCAUGUCUCGACCGGGUCAUGCGGCAUUAUGUGAUGCAUUUUUUAUGCGGUUCGACCCGCUCGCUCUUUGCCUUUUUAUUAUCACAUGUGCAUACACAUGCACAUAAGU
----((((((((((.....(((.((((((..((.((((.(((.....))).....)))).))..)))))).))).....))))............((((((....))))))))))))... ( -41.60)
>DroAna_CAF1 233799 91 + 1
------UGUGGGCGUGACUCGGCCGGGUCAUGCGGCAUUAUGUGGUGCAUUUUUUAUGAG-----------UCGCUC--UGCCUUU----UAUCACAUAUGCAUAUACAU------AAGU
------((((((((((((((....)))))))))((((....((((..(((.....)))..-----------))))..--))))...----..)))))((((......)))------)... ( -30.40)
>DroPer_CAF1 266839 99 + 1
----CAUGUGGGCGUGCCUCGGCCGGGUCAGGCUGCAUUAUGUGGUGCAUUUUUUAUGAG-----------UCGCUC--UGCCUUU----UAUCACAUAUGCAUACACAUGCCCGUAAGU
----.....((((((((...((((......)))))))).(((((((((((.....(((((-----------..((..--.))..))----))).....)))))).)))))))))...... ( -30.60)
>consensus
____CAUGUGGGCGUGCCUCGGCCGGGUCAUGCGGCAUUAUGUGGUGCAUUUUUUAUGAG___________UCGCUC__UGCCUUU____UAUCACAUAUGCAUACACAU______AAGU
....((((((.(((((.(((....))).))))).((((.(((((((((((.....)))...............((.....))........))))))))))))...))))))......... (-26.67 = -26.77 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:13 2006