| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,787,745 – 4,787,856 |
| Length | 111 |
| Max. P | 0.624811 |
| Location | 4,787,745 – 4,787,856 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -14.95 |
| Energy contribution | -15.67 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624811 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4787745 111 + 22407834 -UCAAAAUUGUUCUUA-UCCUUUGAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((.(((........))).))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -24.52) >DroSec_CAF1 236004 111 + 1 -UCAAAAUAAUUCUUA-UCCUUUGAACUCUUUCAUUAUUAAGAGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((((((........))))))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -29.02) >DroSim_CAF1 213163 111 + 1 -UCAAAAUUCUUCCUA-UCGUUUGAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -...............-......((((.(((........))).))))(((((.(((((.............)))))........((((((....))))))....))))).... ( -24.52) >DroEre_CAF1 225036 112 + 1 -UCUAAAUAGUUUCUAUUCCUUGAAAGUCUUUCAUUAUGCAGCGUUCUGUGUCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA -.........((((........))))...........(((.((((.....(((.((.....)).)))....)))).........((((((....))))))....)))...... ( -20.70) >DroYak_CAF1 223949 112 + 1 -UAGACAUGUAACUUUACCCUUGAAACUCUUUCAUUAUUUAGCGUACUCUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUGAUGGUGGAAACGCCAUUAACGCACACACA -......(((...........((((.....)))).......((((........(((((.............)))))......((((((((....))))))))))))))).... ( -22.82) >DroAna_CAF1 233273 107 + 1 UUCUAGUCGAAUCUUG-UCCGAUAAACUCGUUACUUCUU---CGUCC--UGCCUGCCUAGGCUUGAUUAAUAUGCAAUUUCUUGACGGCAGAAUCGCCAUUAACGCACACUCU .....(((((...(((-(.(((.....))).........---.(((.--.((((....))))..)))......))))....)))))(((......)))............... ( -17.60) >consensus _UCAAAAUAAUUCUUA_UCCUUUAAACUCUUUCAUUAUUAAGCGUUCUGUGCCUGCAUUCAGUUGAUUAAUAUGCAAUUUCUUCAUGGUGGAAACGCCAUUAACGCACACACA ...............................................(((((.(((((.............)))))........((((((....))))))....))))).... (-14.95 = -15.67 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:12 2006