| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 545,813 – 545,922 |
| Length | 109 |
| Max. P | 0.771480 |
| Location | 545,813 – 545,922 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.25 |
| Mean single sequence MFE | -36.80 |
| Consensus MFE | -27.07 |
| Energy contribution | -25.88 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.771480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 545813 109 - 22407834 ------UUGAAGAGUGUGAUUUGGGGGGUCCAGACCUCGCUGGACUUCAAAGUGAUCUGCGUGAUGUUGUCAUAUUGUGACGGUUGCCACACGCGCUCCUCGUCUCUCCAUCGCU----- ------..((.(((((((......(((((((((......)))))))))...(..(((..((..((((....))))..))..)))..)....))))))).))..............----- ( -35.30) >DroPse_CAF1 446 120 - 1 GCACCAUUGAAUAGCGUAAUCUGCGGCUUCCAGAUCUCGCUGGCACGCAAAUGGAUCGCCGUAAUGUUCUCAUACUCCUGCGGCUGCCACGUGCGCCGCUCGUCCGUCCAGCGCUGCAAA (((........(((((..(((((.(....))))))..)))))((.((((..(((...((((((..((......))...))))))..)))..))))..(((.(.....).))))))))... ( -38.20) >DroSec_CAF1 2 107 - 1 ------UUGAAGAGUGUGAUUUGGGGGGUCCAGACCUCGCUGGACUUCAAAGUGAUCUCCGUGAUGUUGUCAUAUUGUGACGGUUGCCACACGCGCUCCUCAUCUCUCCAUCG------- ------.(((.(((((((......(((((((((......)))))))))...(((....((((.(((.........))).))))....))).))))))).)))...........------- ( -35.50) >DroEre_CAF1 2 106 - 1 ------UUAAAGAGUGUGAUUUGUGGGGUCCAGACCUCGCUGGACCGCAAGGUGAUCUCCGUGAUGUUGUCAUACUCCGACGGCUGCCACACACGCUCCUCGUCUCUCCAUC-------- ------.....(((((((...((((((((((((......))))))).((.((......)).))..((((((.......))))))..))))))))))))..............-------- ( -36.70) >DroYak_CAF1 3 109 - 1 ------UUGAAGAGUGUGAUUUGUGGUGUCCAGACCUCGCUGGACCGCAAAGUGAUUUCCGUGAUGUUGUCAUAUUCCGACGGCUGCCACACACGCUCCUCAUCUCUCCAUCGCU----- ------.(((.(((((((.(((((((..(((((......)))))))))))).........(((..((((((.......))))))...))).))))))).))).............----- ( -36.90) >DroPer_CAF1 449 120 - 1 GCACCAUUGAAUAGCGUAAUCUGCGGCUUCCAGAUCUCGCUGGCACGCAAAUGGAUCGCCGUAAUGUUCUCAUACUCCUGCGGCUGCCACGUGCGCCGCUCGUCCAUCCAGCGCUGCAAA (((........(((((..(((((.(....))))))..)))))((.((((..(((...((((((..((......))...))))))..)))..))))..(((.(.....).))))))))... ( -38.20) >consensus ______UUGAAGAGUGUGAUUUGCGGGGUCCAGACCUCGCUGGACCGCAAAGUGAUCUCCGUGAUGUUGUCAUACUCCGACGGCUGCCACACGCGCUCCUCGUCUCUCCAUCGCU_____ .......(((.(((((((.((((((..((((((......)))))))))))).........(((..((((((.......))))))...))).))))))).))).................. (-27.07 = -25.88 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:00 2006