Locus 1747

Sequence ID 2L_DroMel_CAF1
Location 4,774,138 – 4,774,232
Length 94
Max. P 0.533034
window2805

overview

Window 5

Location 4,774,138 – 4,774,232
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 92.32
Mean single sequence MFE -22.32
Consensus MFE -18.52
Energy contribution -18.72
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.83
SVM decision value -0.00
SVM RNA-class probability 0.533034
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4774138 94 + 22407834
GGGCUCUGAAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAACUCCGCCCACUUUCCACUUUCCACCUGCC
((((...((.....((((((....))))))(((.(((......))).))).))(((..........)))))))..................... ( -21.60)
>DroSec_CAF1 222475 87 + 1
GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGUAAAACGCCAACUCCGCCCACUU-------UUCACCUGCC
((((...(((....((((((....))))))(((.(((......))).)))................)))))))....-------.......... ( -21.20)
>DroSim_CAF1 199408 87 + 1
GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAAGUCCGCCCACUU-------UUCACCUGCC
.(((....((((((((((((....))))).(((.(((......))).)))..((((..........))))...))))-------)))....))) ( -23.20)
>DroEre_CAF1 211258 87 + 1
GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACCCCAACUCCACCCACUU-------UUCACCUGCC
.(((....((((((((((((....))))).(((.(((......))).)))...(((..........)))....))))-------)))....))) ( -22.50)
>DroYak_CAF1 209637 87 + 1
GGGCUCUGCAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCGCCGGAAAAGCCCAACUCCGCCCACUU-------UUCACCUGCC
((((...((.....((((((....))))))(((.(((......))).))))).(((..........)))))))....-------.......... ( -23.10)
>consensus
GGGCUCUGGAAAAGUUGAGCAAAAGUUCAAGGCUCACACACACGUGCGUCAUCGGAAAACGCCAACUCCGCCCACUU_______UUCACCUGCC
((((..........((((((....))))))(((.(((......))).)))...................))))..................... (-18.52 = -18.72 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:10:07 2006