Locus 1740

Sequence ID 2L_DroMel_CAF1
Location 4,761,816 – 4,761,917
Length 101
Max. P 0.515001
window2795

overview

Window 5

Location 4,761,816 – 4,761,917
Length 101
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 82.44
Mean single sequence MFE -34.78
Consensus MFE -17.61
Energy contribution -18.13
Covariance contribution 0.52
Combinations/Pair 1.25
Mean z-score -2.13
Structure conservation index 0.51
SVM decision value -0.04
SVM RNA-class probability 0.515001
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4761816 101 - 22407834
AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGGAAAAAA---------------UUGCAGCUUUUCG-CCUACAGGUGAAGCCAAU
....--....(((((((....(....).((((((((...(((((((((((.((........)).))))....---------------.))))))))))))-)))...))))..)))... ( -34.70)
>DroSec_CAF1 210134 101 - 1
AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCGGCGGAGAAAAA---------------AUGCAGCUUUUCC-CCUACAGGUGGUGCCAAU
....--....((.(((((.(.(....)((((.((((...((((((((((((.((.....)).))))......---------------)))))))))))))-)))...).)))))))... ( -35.30)
>DroSim_CAF1 187111 102 - 1
AACA--AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGGGAAAAA---------------AUGCAGCUUGCCAAAAUACAGGUGGAGCCAAU
....--....((((((((((((.(....).)).......(((((((((((.((........)).)).....)---------------)))))))).)))........))))..)))... ( -28.50)
>DroEre_CAF1 198713 118 - 1
AACCAGAAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGUCGAUUCGUAGCGACAAAAAAAAAAAAAAAACGUAGGUGAAAGCUUUCG-CCUACAGGUGAAGCCAAU
..((((.........))))(((.(....).)))...(((((((.(((((.((((........)))).................(((((((((....))))-)))))))))).))))))) ( -37.90)
>DroYak_CAF1 196868 102 - 1
AACA--AAUCGGUCAGUGGCGCGUGAGCGGGUGAAAAUUGGCUGCAU-UCGUCGAUUCGUAGUGGCGAAAAAAA-------------GUGCAGCUUUUCG-CCUACAGGUGGAGCCAAU
....--..........((((((....))((((((((...((((((((-((((((........))))))......-------------)))))))))))))-))).........)))).. ( -37.50)
>consensus
AACA__AAUCGGUCACUGGCGCGUGAGAGGGCGAAAAUUGGCUGCAUUUCGGCGAUUCGCAGCGGCGAAAAA_______________AUGCAGCUUUUCG_CCUACAGGUGGAGCCAAU
..........(((((((..(((.(....).)))......((((((((((((.(........))))).....................))))))))............))))..)))... (-17.61 = -18.13 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:57 2006