Locus 1739

Sequence ID 2L_DroMel_CAF1
Location 4,761,178 – 4,761,287
Length 109
Max. P 0.750809
window2794

overview

Window 4

Location 4,761,178 – 4,761,287
Length 109
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.59
Mean single sequence MFE -26.49
Consensus MFE -17.98
Energy contribution -17.26
Covariance contribution -0.72
Combinations/Pair 1.23
Mean z-score -1.69
Structure conservation index 0.68
SVM decision value 0.47
SVM RNA-class probability 0.750809
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4761178 109 + 22407834
UAUGUAAGUACUAAUGCGCUACGUCCUGAUUCCCAACCCGAUUCGCAUUGCAAUUGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGUU
.(((((.(..(....)..))))))...((..(((((((.(((..(((((((....))(((((....))))))))))(((.........)))))))))))))...))... ( -27.60)
>DroPse_CAF1 228275 109 + 1
CUUCUAUAUAUUAAUGCGCUUUGCAGUGAUUCUCUGCCUGAUUCGCAUUCCAAUUGCAAAGUAAAUGCCUUAAUGUGCUUAUCCUUUUAGCAACGGUUGGGCAUUCGCU
...............((((((((((((.......(((.......))).....)))))))))).(((((((...((((((.........))).)))...))))))).)). ( -28.00)
>DroEre_CAF1 198084 97 + 1
UAUGUAGGUACUAAUGCGCUCCGGCCU------------GAUUCGCAUUGCAAUCGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGUU
.........((.(((((.(.(((((((------------((..((((((((....))(((((....))))))))))).........)))).)))))..).))))).)). ( -25.40)
>DroYak_CAF1 196214 92 + 1
UAUGUAGGUACUAAUGCGCUCC-----------------GAUUCGCAUUGCAAUUGCAAAGUAAAUGCUUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGCU
..(((((....(((((((....-----------------....)))))))...))))).((..(((((((...((((((.........)))).))...)))))))..)) ( -24.80)
>DroAna_CAF1 207780 109 + 1
UUUAUAUGUAUUAAUGCGCUUUGUCUUGAUUCCCGCCCCGAUUCCCAUUGCAAUUGCAAAGUAAAUGCCCUAAUGCGCUUAUCCUUUUAGCGCCAGUUGGGCAUUUGUU
..............((((..((((..((.................))..)))).))))...(((((((((....(((((.........))))).....))))))))).. ( -25.13)
>DroPer_CAF1 236041 109 + 1
CUUCUAUAUAUUAAUGCGCUUUGCAGUGAUUCUCUGCCUGAUUCGCAUUCCAAUUGCAAAGUAAAUGCCUUAAUGUGCUUAUCCUUUUAGCAACGGUUGGGCAUUCGCU
...............((((((((((((.......(((.......))).....)))))))))).(((((((...((((((.........))).)))...))))))).)). ( -28.00)
>consensus
UAUGUAUGUACUAAUGCGCUUCGCCCUGAUUC_C__CC_GAUUCGCAUUGCAAUUGCAAAGUAAAUGCCUUAAUGCGCUUAUCCUUUUAGCGUCGGUUGGGCAUUCGCU
...........(((((((.........................))))))).........((..(((((((...((((((.........)))).))...)))))))..)) (-17.98 = -17.26 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:56 2006