Locus 1737

Sequence ID 2L_DroMel_CAF1
Location 4,760,464 – 4,760,567
Length 103
Max. P 0.771953
window2792

overview

Window 2

Location 4,760,464 – 4,760,567
Length 103
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.44
Mean single sequence MFE -29.67
Consensus MFE -15.31
Energy contribution -17.51
Covariance contribution 2.20
Combinations/Pair 1.23
Mean z-score -2.01
Structure conservation index 0.52
SVM decision value 0.53
SVM RNA-class probability 0.771953
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4760464 103 + 22407834
UGUAGCAAUAUGACUUCAUGGUGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGGCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCUGCUGGCUG
.(((((.((((((((((.((((...(((..(.(((((((..---.((..((((.....))))))))))))).).-----.))))))).)))))).)))).)))))...... ( -34.60)
>DroSec_CAF1 208790 95 + 1
UGUAGCAAUAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGCUUGCCAAAAAUUGCCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCU--------
...(((.((((((((((.(((((((........))))))).---.((..((((....((((....)))).))))-----....))...)))))).)))).)))-------- ( -28.10)
>DroSim_CAF1 185759 95 + 1
UGUAGCAAUAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGCCCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCU--------
...(((.((((((((((.(((((((........))))))).---((((.((((....((((....)))).))))-----....)))).)))))).)))).)))-------- ( -31.40)
>DroEre_CAF1 197385 98 + 1
UGUAGCAACAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA---UGGUUGCCAAAAAUUGCUCCGGCAAAUGGC-----CAAUGCCAAGAGGUUGAUGUAACUGCU-----
.((((..((((((((((.(((((((........))))))).---((((.((((....((((....)))).))))-----....)))).)))))).))))..)))).----- ( -33.00)
>DroAna_CAF1 206875 100 + 1
UUUAGCAACAUGACUUCAUGGCAAUAGUAUUGAUUUCCCGCUGCUGCUUGCCAAAAAUUCCUCC-GCGAAUGGC-----CAAUGCCAAGAGGUUGAUGUGGCUGGU-----
.(((((.((((((((((.(((((((((((.((......)).))))).))))))...........-.....((((-----....)))).)))))).)))).))))).----- ( -31.70)
>DroPer_CAF1 235285 90 + 1
UUUAGCUGCAUGACUCCAUUGCGUUAUUAUUGAUUUCCC-A---UGGCUGCCAAAAGUUCUAUA-GAGGCUAGCCUCUUCAAUGCCAGGAGGAGG----------------
..((((.(((((....)).)))))))........(((((-.---((((...............(-((((....))))).....)))).).)))).---------------- ( -19.25)
>consensus
UGUAGCAACAUGACUUCAUGGCGAAAUUAUCGAUUUGCCAA___UGGUUGCCAAAAAUUGCCCCGGCAAAUGGC_____CAAUGCCAAGAGGUUGAUGUGGCU________
...(((.((((((((((.(((((.......(.(((((((.....(((((......)))))....))))))).).........))))).)))))).)))).)))........ (-15.31 = -17.51 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:54 2006