| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,750,944 – 4,751,045 |
| Length | 101 |
| Max. P | 0.546193 |
| Location | 4,750,944 – 4,751,045 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.23 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -10.26 |
| Energy contribution | -10.95 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4750944 101 - 22407834 -AAAUUUUUGCAUAAUCCAAUCAAUGCCACGAAUU-----GAAUCGAAUCUAAUAAAAUGCAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCA--------GAAUGUCGCAAU -......((((.........(((((.......)))-----)).................(((.(((((((((((..(......)..)))))))))--------)).))).)))). ( -22.10) >DroPse_CAF1 217333 114 - 1 GAAACAUUUGCAUAAUCCAAUCAGGGCAUCGAAUCUAUUCAAAUCCAAUCAAAUAAAAUGCAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCUCAUUGGC-AAAUGUCACAAU (..((((((((......((((..((((((.(((....))).........((((...(((((((((.......)))))))))....)))).))))))))))))-))))))..)... ( -24.50) >DroEre_CAF1 187978 102 - 1 CAAACAUUUGCAUAAUCCAAUCAAUGCCACGAAUU-----GAAUCGAAUCUAGUAAAAUGAAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCA--------GCAUGUCGCAAU ...(((((((((((......(((((((..(((...-----...)))......(((((......)))))........)))))))......))))))--------).))))...... ( -22.00) >DroYak_CAF1 186016 102 - 1 CGACUAUUUGCAUAAUCCAAUCAAUGCCACGAAUU-----GAAUCGAAUCUAGUUAAAUGCAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCA--------GAAUGUCGCAAU ((((..((((((((......(((((((..(((...-----...))).....(((((..(((.....)))..))))))))))))......))))))--------))..)))).... ( -27.40) >DroAna_CAF1 198629 109 - 1 AAGACAUUUGCAUAAUCCAAUCAAUGACACGUCGU-----GAAUCAAAUGGAAUAAAAUGCAAU-UGCACAUUAUUGCACUGACUCUUCUAUGCACAUUGACAAAAUGUGGCAAU .......((((............((((....))))-----((.(((..((.(((((..(((...-.)))..))))).)).))).)).......((((((.....)))))))))). ( -19.80) >DroPer_CAF1 225059 114 - 1 GAAACAUUUGCAUAAUCCAAUCAGGGCAUCGAAUCUAUUCAAAUCCAAUCAAAUAAAAUGCAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCUCAUUGGC-AAAUGUCACAAU (..((((((((......((((..((((((.(((....))).........((((...(((((((((.......)))))))))....)))).))))))))))))-))))))..)... ( -24.50) >consensus CAAACAUUUGCAUAAUCCAAUCAAUGCCACGAAUU_____GAAUCGAAUCUAAUAAAAUGCAAUUUGCACAUAAUUGCAUUGACUUUUGUGUGCA________AAAUGUCGCAAU .........(((((......(((((((...((...........)).............(((.....))).......)))))))......)))))..................... (-10.26 = -10.95 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:39 2006