Locus 173

Sequence ID 2L_DroMel_CAF1
Location 540,711 – 540,810
Length 99
Max. P 0.998523
window262

overview

Window 2

Location 540,711 – 540,810
Length 99
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 77.17
Mean single sequence MFE -29.15
Consensus MFE -24.23
Energy contribution -24.85
Covariance contribution 0.62
Combinations/Pair 1.11
Mean z-score -2.56
Structure conservation index 0.83
SVM decision value 3.13
SVM RNA-class probability 0.998523
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 540711 99 - 22407834
UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----ACCAA----------------CGAUCAGCUGAUCUAUCUGAUGCCUGGUCUAAUCUAACGGUUCUUUUAUUA
.((((......))))((((((((..((((.......((.((..-----.)).)----------------)((((....))))..)))).))))))))..((((....))))......... ( -26.60)
>DroSec_CAF1 86194 99 - 1
UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----UCCAA----------------CGAUCAGCUGAUCUCUUUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA
.((((......))))(((((((.((((((.......((.((..-----.)).)----------------)((((....))))..))))))))))))).(((((....)))))........ ( -28.70)
>DroSim_CAF1 88627 99 - 1
UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU-----UCCAA----------------CGAUCAGCUGAUCUCUUUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA
.((((......))))(((((((.((((((.......((.((..-----.)).)----------------)((((....))))..))))))))))))).(((((....)))))........ ( -28.70)
>DroEre_CAF1 89892 111 - 1
-GCUCUAUUCUGAGUACCAGGCGAACAGAAAUCCCAGCAAGUUCUUCUUCAAAAUGGCGUCCUUGUUGCUGAUCAGCUGAUUUGUCUUUUGCCUGGCGUAACCUGACGGUUA--------
-((((......)))).(((((((((.(((((((..((((((..(.((........)).)..))))))(((....))).))))..))))))))))))..(((((....)))))-------- ( -32.60)
>consensus
UGCUCUAUUCUGAGUACCAGGCGAACAGAACUUCUAGUAGGCU_____UCCAA________________CGAUCAGCUGAUCUCUCUGUUGCCUGGUCUAAUCUAACGGUUAUUUUAUUA
.((((......))))(((((((.((((((..........((........))...................((((....))))..))))))))))))).(((((....)))))........ (-24.23 = -24.85 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:57 2006