Locus 1727

Sequence ID 2L_DroMel_CAF1
Location 4,749,411 – 4,749,514
Length 103
Max. P 0.600345
window2772

overview

Window 2

Location 4,749,411 – 4,749,514
Length 103
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 83.58
Mean single sequence MFE -23.01
Consensus MFE -19.20
Energy contribution -19.80
Covariance contribution 0.60
Combinations/Pair 1.12
Mean z-score -1.54
Structure conservation index 0.83
SVM decision value 0.13
SVM RNA-class probability 0.600345
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4749411 103 - 22407834
AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGUGAAUGUGUUUCUUUUU------------U-UUCCGUUUUUCCGUUCUCCUGUUUU
(((((((..(((.((((((...............((((..((....))..).)))((((....))))..........------------.-....)))))).)))..))))))).. ( -21.60)
>DroSec_CAF1 178024 96 - 1
AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU--------------------UUUUCCGUACUCCUGUUUU
((((((..((((.(((((......((........((((..((....))..).)))((((....)))))).......)--------------------)))).))))..)))))).. ( -21.62)
>DroSim_CAF1 173787 96 - 1
AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU--------------------UUUUCCGUCCUCCUGUUUU
(((((((..(((.(((((......((........((((..((....))..).)))((((....)))))).......)--------------------)))).)))..))))))).. ( -19.72)
>DroEre_CAF1 186392 106 - 1
AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGUUGCUGACGUUGCAUGCGAAUGUUUUU---------UUUUGUAUUU-UUGUAUUUUGCCGUUCUCCUGUUUU
(((((((..(((((((((((...((((.((..(((((((.((...(((.......))).)).)).))))).---------.))))))...-.))).))))).)))..))))))).. ( -26.50)
>DroYak_CAF1 184446 116 - 1
AGCAGGGCUAUGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUUUUUUUUUUUUUGUGUUUAUUGUGUUUUUCCGUUCCCCUGUUUU
(((((((..(((.((((((((...((((((..((((((..((....))..).)))((((....))))...........))..)))))).....)))))))).)))..))))))).. ( -25.60)
>consensus
AGCAGGGCUACGCAAAAAUAUUUUACGUAAUUAAAACUUGGCUGCUGCUGACGUUGCAUGCGAAUGUGUUUUCUUUU____________U_UU___UUUUUCCGUUCUCCUGUUUU
(((((((..(((.((((((...............((((..((....))..).)))((((....))))............................)))))).)))..))))))).. (-19.20 = -19.80 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:35 2006