| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,744,759 – 4,744,859 |
| Length | 100 |
| Max. P | 0.939252 |
| Location | 4,744,759 – 4,744,859 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 80.17 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.72 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.30 |
| SVM RNA-class probability | 0.939252 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4744759 100 - 22407834 ---UCAUCGCUC----------CUUCGAACCAAACCGCUGCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.....((((----------(((((...((......))...)))))((((...(((((-(((((...(((((....)))))...))))))))))....))))..)))).... ( -27.80) >DroSec_CAF1 173447 88 - 1 ---UCAU----------------------CCAAGCCGCUGCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---....----------------------.........(((((...((((((...(((((-(((((...(((((....)))))...))))))))))))))))....)))))... ( -25.10) >DroSim_CAF1 169100 103 - 1 AGCUCAUCGCCC----------CUUCGAACCAAACCGCUCCUCCGAAGUUAAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA .((((.......----------(((((................)))))((((...(((((-(((((...(((((....)))))...))))))))))....))))..)))).... ( -27.89) >DroEre_CAF1 181591 104 - 1 ---UCAUCGCACC---CACCCC----GAACUAAACCGCUGCUCAGAAGUUAAAAUACUUCGGGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.....(((((---(....(----(........)).......(((((......))))))))))).....(((...((((....)))).((((......))))....)))... ( -23.70) >DroYak_CAF1 179657 110 - 1 ---UCAUCGCCGUCGCCGCCCCUUUGGAACCAAACCGCUGCUCAGAAGUUGAAAUACUUA-GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---..............((...((((....))))..))(((((...((((((...(((((-(((((...(((((....)))))...))))))))))))))))....)))))... ( -28.30) >DroAna_CAF1 192794 99 - 1 ---CCGCCAUUC------UCCCGCUAC-----AACCAUUACUUUCCAGUUAAAAUACUUA-GGUGAAAUUUAGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ---.........------....(((..-----........((((..((((((...(((((-((((.......((....)).......))))))))))))))).))))))).... ( -16.14) >consensus ___UCAUCGCCC___________UU_GAACCAAACCGCUGCUCCGAAGUUAAAAUACUUA_GGUGCAAUUUUGCAAUUGCGAACGCGCACUUAAGUUUAAUUAAAAGAGCAUUA ......................................(((((...((((((...(((((.(((((...(((((....)))))...))))))))))))))))....)))))... (-17.16 = -17.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:29 2006