Locus 1723

Sequence ID 2L_DroMel_CAF1
Location 4,744,459 – 4,744,555
Length 96
Max. P 0.535268
window2765

overview

Window 5

Location 4,744,459 – 4,744,555
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 82.10
Mean single sequence MFE -31.42
Consensus MFE -19.64
Energy contribution -18.25
Covariance contribution -1.39
Combinations/Pair 1.38
Mean z-score -1.76
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.535268
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4744459 96 + 22407834
GCAC---CUUCAAGUUAAAGGC-----AAGUUUACCUCCUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG
....---......(((((.(((-----.(((((.(((((....))(((.......)))..))))))))..)))(((((.....)))))........)))))... ( -27.10)
>DroPse_CAF1 209374 103 + 1
GCGCC-CUUCAGAGUCAGGGACGUGGAGAAAUUCCUGGCUCAUGGACGAUUAACUCGCUUAGGAACCUGAGCCGUGGCACUUAGUUGCAUUUUUCAUUAGCAUG
((...-.....((((((((((..(....)..))))))))))(((((.(((......((((((....)))))).(..((.....))..)))).)))))..))... ( -31.40)
>DroSim_CAF1 168798 99 + 1
GCUCCCCCUUAAAGUUAAAGGC-----AAGUUUACCUCCUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG
.............(((((.(((-----.(((((.(((((....))(((.......)))..))))))))..)))(((((.....)))))........)))))... ( -27.10)
>DroEre_CAF1 181278 96 + 1
GCAC---CUCAAAGUUAAAGGC-----AAGUUUCCCGACUCAUGGGCGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUAGCUGCAUAUUUCAUUAGCAUG
....---......(((((.(((-----.(((((((.......((((((.......)))))))))))))..)))(((((.....)))))........)))))... ( -29.91)
>DroYak_CAF1 179346 96 + 1
GCAC---CUGAAAGUUGCAGGC-----AAGUUUCGCGACUCAUGGACGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG
((..---.(((((..(((((.(-----((((.(((((......((.........))((((((....))))))))))).))))).)))))..)))))...))... ( -41.30)
>DroPer_CAF1 217079 103 + 1
GCGCC-CUUUAGAGUCAGGGACGUGGAGAAAUUCCUGGCUCAUGGACGAUUAACUCGCUUAGGAACCUGAGCCGUGGCACUUUGUUGCAUUUUUCAUUAGCAUG
((...-.....((((((((((..(....)..))))))))))(((((.(((......((((((....)))))).(..((.....))..)))).)))))..))... ( -31.70)
>consensus
GCAC___CUUAAAGUUAAAGGC_____AAGUUUCCCGACUCAUGGACGAUUAACCCGCUUAGGAAACUGAGCCGCGGCACUUGGCUGCAUAUUUCAUUAGCAUG
((.....(((.......))).....................(((((..........((((((....)))))).(((((.....)))))....)))))..))... (-19.64 = -18.25 +  -1.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:28 2006