Locus 1720

Sequence ID 2L_DroMel_CAF1
Location 4,725,802 – 4,725,910
Length 108
Max. P 0.573727
window2756

overview

Window 6

Location 4,725,802 – 4,725,910
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.44
Mean single sequence MFE -27.85
Consensus MFE -11.91
Energy contribution -12.88
Covariance contribution 0.98
Combinations/Pair 1.38
Mean z-score -2.04
Structure conservation index 0.43
SVM decision value 0.08
SVM RNA-class probability 0.573727
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4725802 108 + 22407834
UUCCUUUAAUGCCAGGACCUCAUUAUGAGGCCAAU------UAAAGCUCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC
...(((((((....((.((((.....)))))).))------)))))....(((.(((((((((((....((.....)).(((((...))------)))...)))))))))))..)))... ( -33.30)
>DroSec_CAF1 154207 114 + 1
UUCCUUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUAAAGACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC
...(((((((..((((.(.((.....)).)))...))..)))))))....(((.(((((((((((....((.....)).(((((...))------)))...)))))))))))..)))... ( -27.90)
>DroSim_CAF1 150198 114 + 1
UUCCCUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUGAAUACCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU------CACAAACUUCAAGGGGCUUUUCCUC
.((((((..((.(((((((((((((..(......)..))).)))....((((......))))..))))))).)).....(((((...))------))).......))))))......... ( -29.10)
>DroEre_CAF1 162186 114 + 1
GUCCUUUUAUGCCAGGACCUCAUUACUAUGCCAAUUGUAAUUAAAGCCCAGAAUGUCCUUUAAGGGUCCUGUCAUUCGAGUGACUAUGU------CACAAACUUCAAGGAGCUUUCCCUC
.(((((..(((.((((((((..((((.((....)).))))((((((..(.....)..)))))))))))))).)))....(((((...))------))).......))))).......... ( -28.50)
>DroYak_CAF1 160686 108 + 1
GCUCCUUAAUGCCGGGACCUCAUUAA------AAUUGUAAUUAAAGCCCAAAAUGUCCUUUAAGGGUCCUGUCAAUCGACUGACCAUGU------CACAAACUUCAAGGGGCUUUUCGUC
(((((((..((.((((((((((....------...))...((((((..(.....)..)))))))))))))).))...(((.......))------).........)))))))........ ( -28.40)
>DroAna_CAF1 171914 110 + 1
-------GGUGCCAGUA-CUCAUUAUUAUGUCAAUUAUAAUUAAAGCAUAGAGUGUCCUUUCGCUUUUCUGUCAAUCGUACGUACGUGUCCUGGCGGCAACCUUCAAGUCAGUUUUUU--
-------((((((.(((-(.....((((((.....))))))....(((.((((((......))))))..))).....))))......((....))))).)))................-- ( -19.90)
>consensus
UUCCUUUAAUGCCAGGACCUCAUUAUGAAGCCAAUUGUAAUUAAAGCCCAGAAUGUCCUUUGAAGGUCCUGUCAAUCAAGUGACCAUGU______CACAAACUUCAAGGGGCUUUUCCUC
.((((((..((.((((((((....................((((((..(.....)..)))))))))))))).))............(((.......)))......))))))......... (-11.91 = -12.88 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:21 2006