| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,705,173 – 4,705,266 |
| Length | 93 |
| Max. P | 0.987191 |
| Location | 4,705,173 – 4,705,266 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 82.95 |
| Mean single sequence MFE | -17.44 |
| Consensus MFE | -10.81 |
| Energy contribution | -10.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -3.33 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.07 |
| SVM RNA-class probability | 0.987191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4705173 93 - 22407834 AUUUUCUCCCUCUCACCCCCCCCCCCUUUUUUUUUGGUGCCACGCCAUCGAUUUUCAUUUGUGGCACCGCAUUUUUGCUCGCAGCA---AAAACAA ...................................(((((((((...............)))))))))...(((((((.....)))---))))... ( -20.46) >DroSim_CAF1 129642 90 - 1 AUUUUCUGCCU--CACCCGCCCCCCUU-UUUUUUUGGUGCCACGCCAUCGAUUUUCAUUUGCGGCACCGCAUUUUUGCUCCCAGCA---AAAACAA ......(((..--...((((.......-..((..(((((...)))))..)).........))))....)))(((((((.....)))---))))... ( -17.47) >DroEre_CAF1 141094 87 - 1 AUUUUCUC----CUGCC----CCUGCU-UUUUUUUUGUGCCAUGCCAUCGAUUUUCAUUUGUGGCCCCGCAUUUUUGCUCCCAGCAAGAAAAACAA .((((((.----.(((.----...((.-........((((...(((((.(((....))).)))))...))))....)).....))))))))).... ( -16.42) >DroYak_CAF1 139704 92 - 1 AUUUUCUACCUCCCUCCCCUCCUUCCU-UUUUUUUUUUGUCAUGCCAUCGAUUUUCAUUUGUGGCACCGCAUUUUUGCUCGCAGCA---AAAACAA ...........................-.........(((..((((((.(((....))).))))))..)))(((((((.....)))---))))... ( -15.40) >consensus AUUUUCUCCCU_CCACCCCCCCCCCCU_UUUUUUUGGUGCCACGCCAUCGAUUUUCAUUUGUGGCACCGCAUUUUUGCUCCCAGCA___AAAACAA ..............................((((...(((...(((((.(((....))).)))))...(((....))).....)))...))))... (-10.81 = -10.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:09:14 2006