| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 537,246 – 537,336 |
| Length | 90 |
| Max. P | 0.775169 |
| Location | 537,246 – 537,336 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 92.41 |
| Mean single sequence MFE | -38.25 |
| Consensus MFE | -31.94 |
| Energy contribution | -33.00 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 537246 90 + 22407834 CCGCAGGCAAGGAACAAGACUCCGACUCCCGCAAUGGUCGCCGUCGCAGCUGCAGCAGCGGCUGCCGCUGCCUCCCUCCAGGCCACGCCG ..((.(((..(((....(((..(((((........)))))..)))(((((.(((((....))))).))))).....)))..)))..)).. ( -37.50) >DroSec_CAF1 82731 90 + 1 CCGCAGGCCAGGAACAAGACUCCAACUCCCGCAAUGGUGGCCGUCGCAGCUGCAGCAGCGGCUGCCGCUGCCUCCCUUCAGGCCACGCCG ..((.((((.(((.......)))............((.(((.((.((((((((....)))))))).)).))).)).....))))..)).. ( -37.70) >DroEre_CAF1 86491 90 + 1 CCGCAGGCCAGGAACAAAACCCCUACUCCUGCGAUGGUCGCCGUCGCAGCUGCAGCAGCGGCUGCCGCUGCCUCCCUCCAGGCCACGCCU ..((.((((.(((...............(((((((((...))))))))).....(((((((...))))))).....))).))))..)).. ( -38.20) >DroYak_CAF1 85930 90 + 1 CCGCAGGCCAGGAACAAGACUCCGACUCCCGCGAUGGUGGCCGUCGCAGCUGCAGCGGCGGCUGCUGCUGCCUCCCUCCAGGCCACACCU .....((((.(((..........(((..((((....))))..)))(((((.(((((....))))).))))).....))).))))...... ( -39.60) >consensus CCGCAGGCCAGGAACAAGACUCCGACUCCCGCAAUGGUCGCCGUCGCAGCUGCAGCAGCGGCUGCCGCUGCCUCCCUCCAGGCCACGCCG .....((((.(((..........(((..((((....))))..)))(((((.(((((....))))).))))).....))).))))...... (-31.94 = -33.00 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:55 2006