Locus 1704

Sequence ID 2L_DroMel_CAF1
Location 4,670,434 – 4,670,531
Length 97
Max. P 0.988336
window2733

overview

Window 3

Location 4,670,434 – 4,670,531
Length 97
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.03
Mean single sequence MFE -25.72
Consensus MFE -14.90
Energy contribution -15.29
Covariance contribution 0.39
Combinations/Pair 1.33
Mean z-score -3.02
Structure conservation index 0.58
SVM decision value 2.12
SVM RNA-class probability 0.988336
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4670434 97 - 22407834
UCGGCAGACAAAGGCUGACUGCCGGCAGUUAACUUAUAUAU------AGGAGUAUGUAUGUAUUUUCCCAAAUUGCCAGCAAAUAUGUGUACAACAUAAAUAA
..(((((.((.....)).)))))(((((((((..(((((((------(......))))))))..))....)))))))......(((((.....)))))..... ( -25.00)
>DroSec_CAF1 99141 93 - 1
UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUGUAUAU------AGCAGUAU----GUAUUUUACCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA
(((((........))))).(((((((((((.....((((((------(....)))----)))).......)))))))))))..(((((.....)))))..... ( -29.20)
>DroSim_CAF1 90861 93 - 1
UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUGUAUAU------AGCAGUAU----GUAUUUUGCCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA
(((((........))))).(((((((((((.....((((((------(....)))----)))).......)))))))))))..(((((.....)))))..... ( -29.20)
>DroEre_CAF1 102771 97 - 1
CUGGCAGACAAAGGCUGACUGCCGGCUGGUAACGUAUAUAU--GUAUAGGAGUAU----GUAUUUUGGAAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA
.((((((.((.....)).))))))((..((((.((((((((--........))))----)))).((....))))))..))...(((((.....)))))..... ( -23.90)
>DroYak_CAF1 103026 99 - 1
CUGGCAGACAAAGGCCAACUGCCGGCAGUUAGCUUAUAUAUACGAGUAGGAGUAU----GUAUUUUGGGAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA
.((((........))))..(((((((((((..((.((((((((........))))----))))...))..)))))))))))..(((((.....)))))..... ( -32.80)
>DroMoj_CAF1 118148 80 - 1
-UGUUAAGCAAAGGCAA---GACGUCAAUAAACCUAUUUGU-------------------UAGCCUCACAAAUUGUGGGCAAAUAUGUGAACAACAUAAAUAA
-.(((..((....))..---)))...((((((....)))))-------------------).(((.(((.....))))))...(((((.....)))))..... ( -14.20)
>consensus
UCGGCAGACAAAGGCCGACUGCCGGCAGUUAACUUAUAUAU______AGGAGUAU____GUAUUUUGCCAAAUUGCUGGCAAAUAUGUGUACAACAUAAAUAA
.((((........))))..(((((((((((.......((((..................)))).......)))))))))))..(((((.....)))))..... (-14.90 = -15.29 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:59 2006