Locus 1701

Sequence ID 2L_DroMel_CAF1
Location 4,651,487 – 4,651,586
Length 99
Max. P 0.678014
window2728

overview

Window 8

Location 4,651,487 – 4,651,586
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 75.53
Mean single sequence MFE -43.95
Consensus MFE -21.47
Energy contribution -23.03
Covariance contribution 1.56
Combinations/Pair 1.39
Mean z-score -1.86
Structure conservation index 0.49
SVM decision value 0.30
SVM RNA-class probability 0.678014
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4651487 99 - 22407834
GCUGGGCGAGGGUUUGGUGGGGCGCUUGAUACUGGUACUGGGCCAAACUGAGGCCGAUGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAGACGCGCAUCU
((((((((.((.((..((..(((.(...((....))...).)))..))..)).))..))))))))....(((---(((((...)))..((....)))).))) ( -38.70)
>DroPse_CAF1 102867 99 - 1
GUUGGGACAGCGUCUGCUGUGGGCCUUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAACAACGCAUCU
((((..((.((..(((((((((((((((((.(((((.....))))).)))))).....))))).))))))..---))(((...)))..))..))))...... ( -47.70)
>DroGri_CAF1 87910 99 - 1
GCUGAUUGAGCGUUUGUUGCGGCGCCAAAUAUUGAUAUUGUGCCAGCGCCAGGCUGCAGCCGAUCAGCAGCA---GCGGCAGGGCGAGAUAGCUACGCAUCU
((((((((.(((((((.((((((((..((((....))))))))).))).)))))....))))))))))....---(((....(((......))).))).... ( -36.30)
>DroMoj_CAF1 103332 99 - 1
GUUCGCGGAGCGUCUGCUGCGGCGCCAGGUAUUGGUAUUGAGCCAGGGUUAGGCUGCAGGCCAGCAGCAGCG---CUGCCAGGGCCAGAUAACGACGCAUCU
....(((.((((.(((((((((((((((...))))).(((((((.......)))).)))))).)))))))))---))((....))..........))).... ( -41.30)
>DroAna_CAF1 85451 102 - 1
UCUGGGCGAGGGUCUGGUGGGGUGCCUGGUACUGGUACUGGGCCAGAGCCAGGGUGCAGCCCAGCAGCAGCACCAGUGCCGGGGCCAAAGAAACGCUCAUCU
..((((((....(((.....(((.((((((((((((.((((((....))).(((.....))).....))).)))))))))))))))..)))..))))))... ( -49.30)
>DroPer_CAF1 99963 99 - 1
GUUGGGACAGCGUCUGCUGUGGGCCCUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGGA---GCGGCAGGGCCAGGUAACAACGCAUCU
((((..((.((..(((((((((((((((((.(((((.....))))).)))))).....))))).))))))..---))(((...)))..))..))))...... ( -50.40)
>consensus
GCUGGGAGAGCGUCUGCUGCGGCGCCUGGUAUUGGUAUUGGGCCAAAGCCAGGCUGCAGCCCAGCAGCAGCA___GCGGCAGGGCCAGAUAACAACGCAUCU
.........((((....(((((..((((((.(((((.....))))).)))))))))))((((.((.((.......)).)).)))).........)))).... (-21.47 = -23.03 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:54 2006