| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 536,750 – 536,857 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 536,750 – 536,857 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.58 |
| Mean single sequence MFE | -45.42 |
| Consensus MFE | -27.65 |
| Energy contribution | -28.68 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 536750 107 - 22407834 UGCAUGCGCAUGUGGCGAUUUAGGGAUACCUUCUUAUCCGCGCUGUAGGAGCACUGGGUGCAGCCAUAUUGCUUUCCUGUCCUGGCCAUUUUGGCUGGUGGCUCG---GU--- .....(((.(((((((.......(((((......)))))(((((.(((.....)))))))).))))))))))...((.((((..(((.....)))..).)))..)---).--- ( -38.60) >DroVir_CAF1 111940 110 - 1 UGCAUGCGCAUGUGCCGAUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCAUUGCGUGCACGCGUAUUGCUUGCCUGUGCGCGCCAUUUUUGCUGGUGGCUCC---GAGCC .....(((((.((((((((.((((....))))...))))))))))).(((((...(((((((((.(((.....))).)))))))))((((......)))))))))---..)). ( -53.50) >DroGri_CAF1 104094 110 - 1 UGCAUGCGCAUGUGUCGAUUGAGGGAGACCUUCUUGUCGGCACUGUAGGAGCACUGGGUGCACGCAUAUUGCUUGCCAAUGCGGGACAUCUUGUUGGGCGGCUCG---GAGCC .(((((((((.((((((((.((((....))))...)))))))))))....((((...))))..))))...(((.(((...(((((....)))))..))))))...---..)). ( -43.70) >DroWil_CAF1 168470 110 - 1 UGCAUCCGCAUGUGACGGUUGAGUGAGACCUUCUUAUCCGCGCUGUAGGAGCACUGCGUGCAGGCAUAUUGCUUGCCCAGGCGCGGCAUUUUGGCUGGCGGUUCGUUGGA--- (((....)))...(((((....((.((.((.......(((((((((((.....))))(.((((((.....)))))).).)))))))......)))).))...)))))...--- ( -39.32) >DroMoj_CAF1 101747 110 - 1 UGCAUACGCAUGUGCCGGUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCACUGCGUGCAGGCGUACUGCUUGCCCGUGCGCGCCACCUUGGCGGGUGGCUCC---GAGCC .((....(((.(((((((..((((....))))....)))))))))).(((((...(((.((((((.....)))))).)))((.((((.....)))).)).)))))---..)). ( -53.50) >DroAna_CAF1 103178 107 - 1 UGCAUUCGCAUGUGUCGGUUGAGGGACACCUUCUUGUCGGCACUGUAGGAGCACUGGGAACAGGCGUAUUGCUUUCCAGUCCUGGCCAUUUUGGCCGGUGGCUCU---GA--- .......(((.(((((((..(((((...)))))...)))))))))).((((((((((((((((.....))).)))))))).((((((.....))))))..)))))---..--- ( -43.90) >consensus UGCAUGCGCAUGUGCCGAUUGAGGGAGACCUUCUUGUCGGCGCUGUAGGAGCACUGCGUGCAGGCAUAUUGCUUGCCAGUGCGCGCCAUUUUGGCUGGUGGCUCG___GA___ .......(((.((((((((.((((....))))...)))))))))))..((((...(((.((((((.....))))))...)))..(((.....))).....))))......... (-27.65 = -28.68 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:54 2006