Locus 1695

Sequence ID 2L_DroMel_CAF1
Location 4,633,677 – 4,633,778
Length 101
Max. P 0.759661
window2710

overview

Window 0

Location 4,633,677 – 4,633,778
Length 101
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.11
Mean single sequence MFE -27.65
Consensus MFE -18.93
Energy contribution -20.35
Covariance contribution 1.42
Combinations/Pair 1.10
Mean z-score -1.80
Structure conservation index 0.68
SVM decision value 0.50
SVM RNA-class probability 0.759661
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4633677 101 - 22407834
CAUACAAUGUAUAAGAUUAUUUAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUACAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCUUGG--CA
........................(((((((..((((((((....(((((((......(.....).....))))))).....)))))))))))))))..--.. ( -27.70)
>DroSec_CAF1 70704 101 - 1
CAUACAAUAAAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGGCCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG--CA
....................((((..(((((..((((((((....(((((((...((.(.....).))..))))))).....)))))))))))))))))--.. ( -29.90)
>DroSim_CAF1 70156 101 - 1
CAUACAAUACAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG--CA
....................((((..(((((..((((((((....(((((((...(..(.....)..)..))))))).....)))))))))))))))))--.. ( -27.30)
>DroEre_CAF1 76033 101 - 1
CCUACAAUCUAUAAGAUUAUGCAGAAGCCCAUAAGGCUUUCCCAGCCGAUUCGAUGCAGGUAAACGACCAGAAUUGGGACAUGGAAGUCUUGGGCCGGG--CA
.....((((.....)))).(((....(((((..((((((((....(((((((......(((.....))).))))))).....)))))))))))))...)--)) ( -29.30)
>DroYak_CAF1 75718 96 - 1
GCCAC-----AUAAGAUUUUGCAAAAGCCCAUAAGGCUUUCCCAGCCGAUUCGAUGCAGGCAACCGACCAGAAUUGGGACAUGAAAGUCUUGGGCCGGG--CA
(((.(-----(........)).....(((((..((((((((....(((((((....(.(....).)....))))))).....)))))))))))))..))--). ( -32.00)
>DroPer_CAF1 88119 94 - 1
UAAACAACAAACAAGUUUAACCCAAAAUCCAGAAGCCUUUCCCAAGCGAUUCGCUGAAG------AACCAGAAUUAGGACG---CAGUCAAGGGCCUGGGCCA
(((((.........)))))........(((((..((((((..(..(((.(((.(((...------...))).....)))))---).)..)))))))))))... ( -19.70)
>consensus
CAUACAAUAAAUAAGAUUAUUCAGAAGCCCACAAGGCUUUCCCAGCCGAUUCGAUGCAGGAAAACGACCAGAAUUGGGACAUGAAAGUCUUGGGCCUGG__CA
..........................(((((..((((((((....(((((((......(.....).....))))))).....)))))))))))))........ (-18.93 = -20.35 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:38 2006