Locus 1693

Sequence ID 2L_DroMel_CAF1
Location 4,631,177 – 4,631,271
Length 94
Max. P 0.949919
window2707 window2708

overview

Window 7

Location 4,631,177 – 4,631,271
Length 94
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 90.28
Mean single sequence MFE -37.60
Consensus MFE -29.80
Energy contribution -29.80
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -2.65
Structure conservation index 0.79
SVM decision value 1.40
SVM RNA-class probability 0.949919
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4631177 94 + 22407834
CAUGGGGCAUUGGGUGUAUGCAUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGGACCCAGUGCCGCCCCUUGCCACUGCCCCGUU
.((((((((....(((((....))))----).....((((((.((....(((((....)))))((((........)))).)).)))))))))))))). ( -40.30)
>DroSim_CAF1 67661 94 + 1
CAUGGGGCAUUGGGUGUAUGCAUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGGACCCAGUGCCGCCCCUUGCCACUGCCCCGUU
.((((((((....(((((....))))----).....((((((.((....(((((....)))))((((........)))).)).)))))))))))))). ( -40.30)
>DroEre_CAF1 73587 94 + 1
CAUGGGGCAUUGGUUGUGUGGCUACA----UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAAUCCAGUGCCGCCCCUUGCCACUCUUUCGAU
((.(((((....(((.((((....))----)).)))..((((((((...(((((....))))).....)))).))))))))).))............. ( -34.90)
>DroYak_CAF1 73178 98 + 1
CAUGGGGCAUUGGGUGUAUGCCAACAUACGUAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAACCCAGUGCCGCCCCUUGCCACUCUUCCAUU
.((((((((((((((.((((((.....(((.....))))))))).....(((((....)))))....))))))))))((.....)).......)))). ( -34.90)
>consensus
CAUGGGGCAUUGGGUGUAUGCAUACA____UAGAACGUGGCAUGGAACAUGCAUCAUGAUGCAGCGAACCCAGUGCCGCCCCUUGCCACUCCCCCGUU
.((((((((.(((.((((....))))..........(((((((((....(((((....)))))......))).))))))......))).)))))))). (-29.80 = -29.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 4,631,177 – 4,631,271
Length 94
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 90.28
Mean single sequence MFE -36.55
Consensus MFE -28.34
Energy contribution -28.15
Covariance contribution -0.19
Combinations/Pair 1.04
Mean z-score -2.34
Structure conservation index 0.78
SVM decision value 0.99
SVM RNA-class probability 0.896987
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4631177 94 - 22407834
AACGGGGCAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAUGCAUACACCCAAUGCCCCAUG
...((((((((((((.((((((((.....).)))))((((....)))).....)).))))))....((----((....)))).......))))))... ( -39.70)
>DroSim_CAF1 67661 94 - 1
AACGGGGCAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAUGCAUACACCCAAUGCCCCAUG
...((((((((((((.((((((((.....).)))))((((....)))).....)).))))))....((----((....)))).......))))))... ( -39.70)
>DroEre_CAF1 73587 94 - 1
AUCGAAAGAGUGGCAAGGGGCGGCACUGGAUUCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA----UGUAGCCACACAACCAAUGCCCCAUG
.((....)).......(((((((((.((((..((.(((((....))))))).))))))))........----(((......)))......)))))... ( -31.90)
>DroYak_CAF1 73178 98 - 1
AAUGGAAGAGUGGCAAGGGGCGGCACUGGGUUCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUACGUAUGUUGGCAUACACCCAAUGCCCCAUG
.((((......((((..(((.((((.((((..((.(((((....))))))).)))))))).........(((((....))))).)))..)))))))). ( -34.90)
>consensus
AACGGAACAGUGGCAAGGGGCGGCACUGGGUCCGCUGCAUCAUGAUGCAUGUUCCAUGCCACGUUCUA____UGUAGGCAUACACCCAAUGCCCCAUG
................(((((((((.((((..((.(((((....))))))).))))))))............(((......)))......)))))... (-28.34 = -28.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:36 2006