Locus 1689

Sequence ID 2L_DroMel_CAF1
Location 4,596,137 – 4,596,230
Length 93
Max. P 0.778742
window2697

overview

Window 7

Location 4,596,137 – 4,596,230
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 87.53
Mean single sequence MFE -24.25
Consensus MFE -18.71
Energy contribution -17.60
Covariance contribution -1.11
Combinations/Pair 1.33
Mean z-score -2.96
Structure conservation index 0.77
SVM decision value 0.55
SVM RNA-class probability 0.778742
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4596137 93 + 22407834
GCGCAUUCGCCUGCAAAAUAUAAAAUGUGCAGUAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCAUUU
(((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -23.70)
>DroSec_CAF1 41009 93 + 1
GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU
(((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -25.70)
>DroSim_CAF1 38621 93 + 1
GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGUAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU
(((....)))..(((((((((((((((((.((((........(((((.......))))).)))))))))))))))))))))............ ( -23.70)
>DroEre_CAF1 43639 90 + 1
GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUUCGGCUCAGUCAAUUUAAGUGACUGCUCACGUUUUUUAUUUUGC---UGAUCUUUU
(((....)))..((((((((.((((((((.(((.......)))((((((.......))))))..)))))))).))))))))---......... ( -23.70)
>DroYak_CAF1 44129 93 + 1
GCGUAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUUCGCUUUACUCGAUUUAAGUGACUGCUCACGUUUUUUAUUUUGUCCAUGAUCUUUU
(((....)))..((((((((.((((((((.((((...((((((..........)))))).)))))))))))).))))))))............ ( -25.50)
>DroAna_CAF1 40398 93 + 1
GGGUAUUUGACUUGAAAAUGCAAAAUGUGCAGCGAAUUUGCUUCGCUCAAUUUAAGUGGCUGCUCACGUUUUAUAUUUUAGCCGAGAUCCCUU
(((.((((.(((((((..((((.....))))(((((.....)))))....)))))))(((((................))))).))))))).. ( -23.19)
>consensus
GCGCAUUCGCCUGCAAAAUGUAAAAUGUGCAGCAAAUACGUUUCACUCAAUUUAAGUGACUGCUCACGUUUUAUAUUUUGUCCAAGAUCUUUU
......((....((((((((.((((((((.((((........(((((.......))))).)))))))))))).))))))))....))...... (-18.71 = -17.60 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:26 2006