Locus 1688

Sequence ID 2L_DroMel_CAF1
Location 4,595,250 – 4,595,346
Length 96
Max. P 0.985229
window2696

overview

Window 6

Location 4,595,250 – 4,595,346
Length 96
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -22.39
Consensus MFE -12.44
Energy contribution -12.67
Covariance contribution 0.22
Combinations/Pair 1.07
Mean z-score -2.90
Structure conservation index 0.56
SVM decision value 2.00
SVM RNA-class probability 0.985229
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4595250 96 - 22407834
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA-UAACAAAUUAGACGAUGCCAGCCCGCUGGGAUUCUCUCGUUUUGG--------------------GAUUGUCCA
.((((((((((......))))))))))...........((((-(..((((..(((.(((.((((....)))).))).)))...)))).--------------------.)))))... ( -30.50)
>DroVir_CAF1 41502 114 - 1
AUCAACUCAAUUUAUCAGUUGACUUGACAAACACAAUAAC-AAAUACAAAUUACCUGGCGACAAA--UACGGCUGCCUCUCACUGCACUCUCUCGAGCAGCAGCUUCUCUCUCACCU
.((((.(((((......))))).)))).............-...............((.((....--...((((((..(((.............)))..))))))......)).)). ( -19.84)
>DroSec_CAF1 40122 96 - 1
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA-UAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGG--------------------GUUUGUCCA
.((((((((((......))))))))))...........((((-...((((..(((.(((..(((....)))..))).)))...)))).--------------------..))))... ( -22.50)
>DroSim_CAF1 37733 96 - 1
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA-UAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGG--------------------GUUUGUCCA
.((((((((((......))))))))))...........((((-...((((..(((.(((..(((....)))..))).)))...)))).--------------------..))))... ( -22.50)
>DroEre_CAF1 42816 88 - 1
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA-UAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCU--CGUU--------------------------UUGUCCA
.((((((((((......))))))))))...............-..(((((...((.(((..(((....)))..))).)--)..)--------------------------))))... ( -20.10)
>DroYak_CAF1 43275 88 - 1
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA-UAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCU--CGUU--------------------------UUGCCCA
.((((((((((......))))))))))...............-...((((...((.(((..(((....)))..))).)--)..)--------------------------))).... ( -18.90)
>consensus
AUCAAGUCAAUUUAUCAGUUGACUUGACAAAUACAAUAACAA_UAACAAAUUAGACGAUGCCAGCCCGCUGUGAUUCUCUCGUUUUGG____________________GUUUGUCCA
.((((((((((......)))))))))).............................((...(((....)))....))........................................ (-12.44 = -12.67 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:25 2006