Locus 1687

Sequence ID 2L_DroMel_CAF1
Location 4,593,515 – 4,593,634
Length 119
Max. P 0.983468
window2695

overview

Window 5

Location 4,593,515 – 4,593,634
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.28
Mean single sequence MFE -26.54
Consensus MFE -20.70
Energy contribution -21.66
Covariance contribution 0.96
Combinations/Pair 1.12
Mean z-score -2.62
Structure conservation index 0.78
SVM decision value 1.94
SVM RNA-class probability 0.983468
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4593515 119 - 22407834
CUCGAAAUUUUCCUUCACUUAAGUGGCUACCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCGUCUUCAAACGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCAUCAGUUU
.............((((((((((((........(((((.(((((....)))))..)))))((((((......))))))............-.....))))))))))))............ ( -31.40)
>DroSec_CAF1 38389 119 - 1
CUCGGAAUUUUCCUUCACUUAAGUGGCUAUCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCACCAGUUU
...(((....)))((((((((((((.......((((((.(((((....)))))..))))))..............(((((.......)))-))...))))))))))))............ ( -32.90)
>DroSim_CAF1 35995 119 - 1
CUCGGAAUUUUCCUUCACUCAAGUGGCUAUCAUAAAGUGUCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUUAGGUGAAACCCACCAGUUU
...(((....)))(((((..(((((.......((((((.(((((....)))))..))))))..............(((((.......)))-))...)))))..)))))............ ( -27.10)
>DroEre_CAF1 41070 119 - 1
CUCGAAAUUUUCCUUCACUUAAGUGGCGAUCAUAAAGUGGCUGUUUAGACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA-CCAAACACUCAAGUCAAACCCACCAGUUU
................((((.((((..(((..((((((..((((....))))...))))))...)))........(((((.......)))-))...)))).))))............... ( -19.10)
>DroYak_CAF1 41521 106 - 1
CUCGGAAUUUUCCUUCACUUAAG--------------UGGCUGUUUAGACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUAGCCAAACACUUAAGUCAAAACCACCAGUUU
...(((....)))...(((((((--------------(((((((((((..((....)).(((((((......)))))))...)))).))))))....))))))))............... ( -22.20)
>consensus
CUCGGAAUUUUCCUUCACUUAAGUGGCUAUCAUAAAGUGCCUGUUUUAACAGGGAACUUUACUCAUCUUCAAAUGGGUAUAAUUAACAUA_CCAAACACUUAGGUGAAACCCACCAGUUU
.............((((((((((((..............(((((....)))))......(((((((......))))))).................))))))))))))............ (-20.70 = -21.66 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:24 2006