Locus 1686

Sequence ID 2L_DroMel_CAF1
Location 4,592,353 – 4,592,444
Length 91
Max. P 0.914224
window2694

overview

Window 4

Location 4,592,353 – 4,592,444
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 95.78
Mean single sequence MFE -18.30
Consensus MFE -16.20
Energy contribution -16.09
Covariance contribution -0.11
Combinations/Pair 1.12
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value 1.09
SVM RNA-class probability 0.914224
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4592353 91 + 22407834
UUUGACUU-UUGAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCGGUCGCACAU
........-..((((((((((.....)))((..((.((((....)))).))..))........................)))))))...... ( -14.40)
>DroVir_CAF1 38840 92 + 1
UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUAUUUUGGUGUCAGGCGCACAU
..........................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.70)
>DroPse_CAF1 47915 91 + 1
UUUGACUU-UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU
........-.................((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06)
>DroGri_CAF1 37563 92 + 1
UUUGACUUUUUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGUACAU
..........................((((((((((((((((((((((...............)))))))))....)))))))))))))... ( -21.66)
>DroAna_CAF1 36708 91 + 1
UAUGACUU-UUGAUUGACGUAAUUUCUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU
........-.................(((((((((....((((.((((....(((......))).......)))).)))))))))))))... ( -17.90)
>DroPer_CAF1 40563 91 + 1
UUUGACUU-UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCAGUUGAAUUUCUUGUAUUUCCACAUUUAACCGUUUUGGUGUCAGGCGCACAU
........-.................((((((((((((((.(((((((...............))))))).)....)))))))))))))... ( -19.06)
>consensus
UUUGACUU_UUGAUUGACGUAAUUUUUGCGCUUGAUAUUCACUUGAAUUUCUUGUAUUUCCACAUUUAACUGUUUUGGUGUCAGGCGCACAU
..........................(((((((((((((.............(((......)))............)))))))))))))... (-16.20 = -16.09 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:23 2006