Locus 1685

Sequence ID 2L_DroMel_CAF1
Location 4,590,154 – 4,590,245
Length 91
Max. P 0.892345
window2693

overview

Window 3

Location 4,590,154 – 4,590,245
Length 91
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 88.43
Mean single sequence MFE -26.93
Consensus MFE -24.73
Energy contribution -24.23
Covariance contribution -0.50
Combinations/Pair 1.24
Mean z-score -1.61
Structure conservation index 0.92
SVM decision value 0.97
SVM RNA-class probability 0.892345
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4590154 91 + 22407834
AGCAGAGCAUUCACU-------UUGGGUCCCUUGGCUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGAGUCAAGCGCUUUGGCUCAUAAU
..((((((((((...-------..))))..((((((((((((...((((((..........)))...))))--))))))))))).))))))......... ( -27.40)
>DroPse_CAF1 45126 100 + 1
AGCGAAGCAUUCACUGGGUUUUUUGGGUCCCUUGGCUCAUUUAAUUGUGGCAAUUUCUUUCGCCCACGCAGCGAGUGAGUCAAGCGCUUUGGCUCAUAAU
..((((((.......((..(.....)..))((((((((((((..(((((((..........).))))).)..)))))))))))).))))))......... ( -28.50)
>DroSim_CAF1 32625 91 + 1
AACAGAGCAUUCACU-------UUGGGUCCCUUGACUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGGAUCAAGCGCUUUGGUUCAUAAU
..(((((((((((((-------(((((((....))))))......((((((..........)))...))))--))))))).....))))))......... ( -24.00)
>DroEre_CAF1 37614 91 + 1
AGCAGAGCAUUCACU-------UUGGGUCCCUUGACUCACUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG--AGUGAGUCAAGCCAUUUGGCUCAUAAU
....((((.......-------.(((....((((((((((((...((((((..........)))...))))--))))))))))))))....))))..... ( -29.70)
>DroAna_CAF1 34326 96 + 1
AGCGAAGCAUUCACUU--UAUUUUGGGUCCCUUGGCUCAUUUAAUUACGGCAAUUUCUUUCGCCCACGCGG--ACUGAGUCAAGCGCUUUGGAUCAUAAU
..((((((....((((--......))))..(((((((((.((......(((..........)))......)--).))))))))).))))))......... ( -23.50)
>DroPer_CAF1 37755 100 + 1
AGCGAAGCAUUCACUGGGUUUUUUGGGUCCCUUGGCUCAUUUAAUUGUGGCAAUUUCUUUCGCCCACGCAGCGAGUGAGUCAAGCGCUUUGGCUCAUAAU
..((((((.......((..(.....)..))((((((((((((..(((((((..........).))))).)..)))))))))))).))))))......... ( -28.50)
>consensus
AGCAAAGCAUUCACU_______UUGGGUCCCUUGGCUCAUUUAAUUGCGGCAAUUUCUUUCGCCCACGCAG__AGUGAGUCAAGCGCUUUGGCUCAUAAU
..(((((((((((..........)))))..(((((((((((...(((((((..........)))...))))..))))))))))).))))))......... (-24.73 = -24.23 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:22 2006