Locus 1683

Sequence ID 2L_DroMel_CAF1
Location 4,579,920 – 4,580,027
Length 107
Max. P 0.827299
window2691

overview

Window 1

Location 4,579,920 – 4,580,027
Length 107
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 89.34
Mean single sequence MFE -25.96
Consensus MFE -18.42
Energy contribution -19.66
Covariance contribution 1.24
Combinations/Pair 1.04
Mean z-score -2.45
Structure conservation index 0.71
SVM decision value 0.70
SVM RNA-class probability 0.827299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4579920 107 + 22407834
CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU
.(((.((((((((.((((.(((((.........((((((((((.......))))))))))))))).-------...))))))))))))......)))................. ( -30.40)
>DroSec_CAF1 25078 107 + 1
CGGAGAUCAUCGCGUGACUGGCCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUAUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU
.(((.((((((((.((((((.....))......((((((((((.......))))))))))......-------...))))))))))))......)))................. ( -25.00)
>DroSim_CAF1 22501 107 + 1
CGGAGAUCAUCGCGUGACUGGCCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUAUCCU-------UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU
.(((.((((((((.((((((.....))......((((((((((.......))))))))))......-------...))))))))))))......)))................. ( -25.00)
>DroEre_CAF1 27401 107 + 1
CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU-------UCUGUCAGCGAUGAUAAAAUAUCAUACCACUCUCUUCUAAA
.((((((((((((.((((.(((((.........((((((((((.......))))))))))))))).-------...)))))))))))................)))))...... ( -28.49)
>DroYak_CAF1 24979 107 + 1
CGGAGAUCAUUGCGUGACUGGGCAACAAAAACCCAUGAUAAAUUCCUCACAUUUAUGAUGUGUCCUGCGAAUGUUUGCCAGCGAAG-------AUCAUACCACUCUGUUCUAAU
(((((........((((.((((.........)))).((.....)).))))...((((((.(.((((((((....))).))).))).-------))))))...)))))....... ( -20.90)
>consensus
CGGAGAUCAUCGCGUGACUGGGCAACAAAAACCCAUUAUAAAUUCCUCACAUUUAUGAUGUGUCCU_______UCUGUCAGCGAUGAUAAAAGAUCCUACCAAUCUGUUCUAGU
.(((.((((((((.((((..(....).......((((((((((.......))))))))))................))))))))))))......)))................. (-18.42 = -19.66 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:20 2006