Locus 1682

Sequence ID 2L_DroMel_CAF1
Location 4,577,773 – 4,577,866
Length 93
Max. P 0.976550
window2690

overview

Window 0

Location 4,577,773 – 4,577,866
Length 93
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 69.04
Mean single sequence MFE -31.69
Consensus MFE -11.74
Energy contribution -12.06
Covariance contribution 0.32
Combinations/Pair 1.25
Mean z-score -2.26
Structure conservation index 0.37
SVM decision value 1.77
SVM RNA-class probability 0.976550
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4577773 93 - 22407834
GAGGGCG---AUGAAG------AAGACUUGGAGUCGGACAA------UGGGUAUGAGACCACUCCGAGUCCCAGGAAGAAACGAUCACGAAAUGCCUAGUCCAUAAAA-------
..((((.---......------..((((((((((.((....------...........))))))))))))..(((......((....)).....))).))))......------- ( -24.46)
>DroSec_CAF1 22978 104 - 1
GAGUGCU---AUGAAG------ACUCCUUGGACUCGGACUCGGAC--UCGGUCUGAGACCACUCCGAGUCCCAAGAAGAAACGGGCACCAAGUGCCUAGUCCAUAAAACAAGUAC
..((..(---(((..(------(((.(((((((((((((((((((--...))))))).....))))))).))))).......((((((...))))))))))))))..))...... ( -39.60)
>DroSim_CAF1 20029 100 - 1
CAGUGCU---AUGAAG------ACUCCUUGGACUCGGACUG------UGGGUCUGAGACCACUCCGAGUCCCGAGAAGAAACGGGCACCAAGUGCCUAGUCCAUAAAACAAGUAC
..((..(---(((..(------(((.((((((((((((..(------(((........))))))))))).))))).......((((((...))))))))))))))..))...... ( -38.00)
>DroEre_CAF1 25228 109 - 1
GCCAGCGACCAUGAAG------ACACCAUGGACUUGGACUCCGACAAUGGGUAUGAAACCACUUCGAGCCCGUCAAAGGAACGUUCAUCAAAAGCCUAGGUCAUAACGCAAAUUC
....(((..((((...------....))))(((((((..(((....((((((.((((.....)))).))))))....)))..(((.......))))))))))....)))...... ( -28.60)
>DroYak_CAF1 22766 115 - 1
GUCAUCGACCAAGAAGACCAAGACCCCCUGGACUUGGACAUCGACAACGGUUAUGAAACCACUUCGAGUCCCGCGAAAGAACGGUCAUCAAAUGAAUAGGUCAUUAAGCAAAUUC
......((((..((((.(((((.((....)).)))))...........((((....)))).))))((...((((....)..)))...)).........))))............. ( -27.80)
>consensus
GAGAGCG___AUGAAG______ACUCCUUGGACUCGGACUC_GAC__UGGGUAUGAGACCACUCCGAGUCCCAAGAAGAAACGGUCACCAAAUGCCUAGUCCAUAAAACAAAUAC
.............................(((((((((...........(((.....)))..)))))))))...........((((............))))............. (-11.74 = -12.06 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:19 2006