| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,570,847 – 4,570,942 |
| Length | 95 |
| Max. P | 0.572702 |
| Location | 4,570,847 – 4,570,942 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.96 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -18.37 |
| Energy contribution | -19.07 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.572702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4570847 95 - 22407834 GCUAUUCAACCUAUCGAAACUAUGCGACGGUACCCAAGAUUGCUUCCUGGGUGCCGAUGAGUUGAGCAAAGAGCUCAAAUGCACAAGUGAGUA-UC---- ..((((((.....(((........)))(((((((((.((.....)).))))))))).((..((((((.....))))))...))....))))))-..---- ( -31.20) >DroVir_CAF1 16549 99 - 1 ACUAUACGAUCUAUCGAGAAUAUGCGACGGUAAUCAAGACUGUUUUCUUGGUUCCGAUGAGCUGAGCAAAGAGCUCAAAUGCACAAGUAUGUA-UCAACA ......(((....))).((((((((..(((.((((((((......))))))))))).((.(((((((.....)))))...)).)).)))))).-)).... ( -26.70) >DroGri_CAF1 16340 99 - 1 ACUAUACGACCUAUCGAAAAUAUGCGACGGCAAACAAGACUGUUUUCUUGGUUCCGAUGAGCUGAGCAAAGAGCUUAAAUGCACAAGUAAGUU-ACCUCU ......(((....)))..(((.(((....(((...(((.((.(((.((..((((....))))..)).))).)))))...)))....))).)))-...... ( -19.60) >DroWil_CAF1 7835 94 - 1 AUUAUACGAACUAUCGAAAUUAUGCGACGGCACCCAAGACUGUUAUCUGGGUUCCGAUGAGCUGAACAAAGAGCUCAAAUGCACAAGUGAGUA-U----- ...((((..(((.(((........)))(((.(((((.((......))))))).))).((((((........))))))........)))..)))-)----- ( -25.20) >DroMoj_CAF1 16287 99 - 1 ACUAUACGAUCUAUCGAAAAUCUGCGACGGCAAUCAAGACUGUUUUCUUGGUUCCGAUGAGCUGAGCAAAGAGCUCAAAUGCACAAGUAAGCA-CCACCC (((...(((....)))......((((.(((.((((((((......))))))))))).((((((........))))))..))))..))).....-...... ( -24.30) >DroPer_CAF1 16238 96 - 1 AUUAUACGAACUAUCGAAACUAUGCGACGGCAAUCAAGACUGCUAUCUUGGUUCCGAUGAGCAAAACAAAGAGCUCAAAUGCACAAGUGAGUAAUC---- (((((.(((....)))..(((.((((.(((.((((((((......))))))))))).(((((..........)))))..))))..)))..))))).---- ( -22.90) >consensus ACUAUACGAACUAUCGAAAAUAUGCGACGGCAAUCAAGACUGUUUUCUUGGUUCCGAUGAGCUGAGCAAAGAGCUCAAAUGCACAAGUAAGUA_UC____ (((...(((....)))......((((.(((.((((((((......))))))))))).((((((........))))))..))))..)))............ (-18.37 = -19.07 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:17 2006