Locus 1679

Sequence ID 2L_DroMel_CAF1
Location 4,567,415 – 4,567,506
Length 91
Max. P 0.753649
window2686

overview

Window 6

Location 4,567,415 – 4,567,506
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 90.31
Mean single sequence MFE -23.94
Consensus MFE -16.54
Energy contribution -16.42
Covariance contribution -0.12
Combinations/Pair 1.19
Mean z-score -2.69
Structure conservation index 0.69
SVM decision value 0.48
SVM RNA-class probability 0.753649
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4567415 91 - 22407834
AGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAGUACAAAAGUACCCUAGUUA
........((((((((((....))))))))))(((.((((.......)))).....((((((((((.....)).)))))))))))...... ( -24.50)
>DroSec_CAF1 12188 89 - 1
CGUUUUCUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG--CAAAAACGCUCUAGUUG
.....(((((((((((((....)))))))))))))...((((....(((.(.((((.....))))))))(((--(......))))..)))) ( -25.50)
>DroSim_CAF1 9300 89 - 1
CGUUUUCUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG--CAAAAACGCUCUAGUUG
.....(((((((((((((....)))))))))))))...((((....(((.(.((((.....))))))))(((--(......))))..)))) ( -25.50)
>DroEre_CAF1 12337 89 - 1
CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAUGCUUUCAGCAAGAAUGAGCUUAAUACUGUUGACCAUGAG--CAAUAAUGCUCUAGUUG
((((((..((((((((((....))))))))))(((.....)))))))))(((........)))(((...(((--((....)))))..))). ( -24.50)
>DroYak_CAF1 12190 89 - 1
CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGAUUUCAACAAGAAUGAGCUUUAUACUCUUGACCAUGAC--ACAUAAUCCUCUAGUUG
.(((.(((((((((((((....)))))))))))))....)))......(((..((((..((........)).--..))))..)))...... ( -19.70)
>consensus
CGUUUUUUUAAUACCCUUCAAGGAGGGUAUUAGGGUUUCAACAAGAAUGAGCUUAAUACUUUUGACCAUGAG__CAAAAAUGCUCUAGUUG
.(((.(((((((((((((....)))))))))))))....)))................................................. (-16.54 = -16.42 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:16 2006