Locus 1674

Sequence ID 2L_DroMel_CAF1
Location 4,547,818 – 4,547,927
Length 109
Max. P 0.961273
window2680

overview

Window 0

Location 4,547,818 – 4,547,927
Length 109
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 91.39
Mean single sequence MFE -24.80
Consensus MFE -21.75
Energy contribution -21.75
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.88
SVM decision value 1.52
SVM RNA-class probability 0.961273
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4547818 109 + 22407834
UGUGCUUUAUCGCUGAUAUAUUUAUGUUUUUUUUUUUUUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG
..((((((....((.((((((...((((((........((((..(....)..)))).))))))..(((..((.....))..))))))))).))..))))))(....).. ( -23.90)
>DroSim_CAF1 14962 101 + 1
UGUGCUUUAUCGCUGAUAUAUUUUGGU--------UUUUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG
..((((((....((.((((((....((--------(((((((..(....)..)))).)))))...(((..((.....))..))))))))).))..))))))(....).. ( -25.40)
>DroEre_CAF1 56772 95 + 1
UGUGCUUUAUCGCUGUUAUAUUUU--------------UUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG
..((((((.((.(((((.((((.(--------------((((......))))).)))).))))).(((..((.....))..)))........)).))))))(....).. ( -24.50)
>DroYak_CAF1 44391 98 + 1
UGUGCUUUAUCGCUGUUAUAUUUUUG-----------UUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG
..((((((.((.(((((.(((...((-----------(((((......)))))))))).))))).(((..((.....))..)))........)).))))))(....).. ( -25.40)
>consensus
UGUGCUUUAUCGCUGAUAUAUUUUUG___________UUUGUAAGGGGACAGACAAUAAGACAGAGCUAGCAAAAGGUGAGAGCGUGUGUGAGAAAGAGCAGGAAACAG
..((((((.((((.........................((((..(....)..))))....(((..(((..((.....))..))).)))))))...))))))(....).. (-21.75 = -21.75 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:10 2006