Locus 1672

Sequence ID 2L_DroMel_CAF1
Location 4,530,092 – 4,530,212
Length 120
Max. P 0.539912
window2677

overview

Window 7

Location 4,530,092 – 4,530,212
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.72
Mean single sequence MFE -42.40
Consensus MFE -30.92
Energy contribution -30.10
Covariance contribution -0.82
Combinations/Pair 1.48
Mean z-score -1.16
Structure conservation index 0.73
SVM decision value 0.01
SVM RNA-class probability 0.539912
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4530092 120 - 22407834
CGACGCUGCAUCAAUCCCUGCCAAGAGGACUCUUGCGGCGAGAAUGCCGAGUGCAUACCCGUGAACCAUGGCACUGAAUGUCGCUGCCUGCCCGGAUUUCUGGGCAACGCCUACGUGCAG
...(((((((....(((((....)).)))....)))))))....(((((((.((...............((((.((.....)).))))(((((((....)))))))..)))).)).))). ( -44.20)
>DroVir_CAF1 45644 120 - 1
CGACGCUGUAUUAAUCCUUGCCAAGAGGAUUCGUGCGGCGAAAACGCCGAGUGUGUUCCGGUUAACCAUGGCAUCGAUUGUCGCUGCUUACCCGGAUACCUAGGCAAUGCGUAUGUUCUA
...((((((((.(((((((.....))))))).)))))))).....(((.((.((((.((((.(((.(((((((.....))))).)).))).)))))))))).)))............... ( -44.50)
>DroGri_CAF1 46103 120 - 1
CGUCGUUGCAUCAAUCCCUGCCAAGAGGAUUCCUGUGGCGAGAACGCCGAAUGUGUACCGGUCAACCAUGGCAUCGACUGCCGCUGUUUGCCCGGCUACUUGGGUAAUGCCUAUGUUUUA
..((((..((..(((((((....)).)))))..))..))))(((((........(((((((.(((.(((((((.....))))).)).))).)))).))).((((.....))))))))).. ( -39.30)
>DroWil_CAF1 306 120 - 1
CGUCGCUGCAUUAAUCCAUGCCAAGAAGAUUCUUGUGGUGAGAACGCCGAAUGUGUGCCGGUUAAUCAUGGCAUCGAUUGUCACUGUUUGCCUGGUUUCUUGGGAAAUGCCUAUGUCCAG
....((.(((.(((((.((((((.((...(((((.....))))).((((.........))))...)).)))))).)))))....)))..))((((...(.((((.....)))).).)))) ( -29.50)
>DroMoj_CAF1 52676 120 - 1
CGACGCUGCAUAAAUCCUUGCCAAGAGGAUUCGUGCGGAGAGAACGCUGAGUGUGUGCCGGUCAACCACGGCAUCAACUGUCGCUGCUUGCCCGGAUAUUUGGGCAAUGCAUACGUUCUU
.....(((((..(((((((.....)))))))..))))).(((((((...(((..((((((........))))))..))).....(((((((((((....)))))))).)))..))))))) ( -49.60)
>DroAna_CAF1 45439 120 - 1
CGCCGCUGCAUCAAUCCCUGCCAGGAGGAUUCGUGCGGCGAGAAUGCCGAGUGCAUUCCCGUCAACCACGGCACCGACUGUCGCUGCCUGCCCGGAUUCCUGGGCAACGCCUAUGUCCAG
.((((..((((.(((((((....)).))))).))))((((.((((((.....)))))).)))).....))))...(((....((....(((((((....)))))))..))....)))... ( -47.30)
>consensus
CGACGCUGCAUCAAUCCCUGCCAAGAGGAUUCGUGCGGCGAGAACGCCGAGUGUGUACCGGUCAACCAUGGCAUCGACUGUCGCUGCUUGCCCGGAUACCUGGGCAAUGCCUAUGUUCAG
...(((((((..(((((((....)).)))))..))))))).....(((.((......((((.(((.(((((((.....))))).)).))).))))....)).)))............... (-30.92 = -30.10 +  -0.82)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:07 2006