Locus 1670

Sequence ID 2L_DroMel_CAF1
Location 4,523,152 – 4,523,272
Length 120
Max. P 0.512118
window2674

overview

Window 4

Location 4,523,152 – 4,523,272
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.83
Mean single sequence MFE -48.13
Consensus MFE -36.10
Energy contribution -36.52
Covariance contribution 0.42
Combinations/Pair 1.21
Mean z-score -2.11
Structure conservation index 0.75
SVM decision value -0.04
SVM RNA-class probability 0.512118
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4523152 120 - 22407834
CAAUGAGCAGGCUGUCUGCUCAUGCUUGCAACAUUACGUGGGUAGGGCGCCAAAUUGCCGACCGGAGUGUACAUCCGAUUCCGAGUGCCCUGGCAAUUUGGCGUGCAUAAAUCUGCGCUG
..((((((((.....))))))))(((..(........)..))).(.((((((((((((((((((((((.........)))))).))....)))))))))))))).).............. ( -48.30)
>DroPse_CAF1 39073 120 - 1
UAAUGAUCAGCCCGUCUGCUCAUGCUUGCAACAUUAUGUGGGUAGGGCGCCAAAUUGCCGACCCGAGUGCACUUCGAACUCGGAGUGUGCCGGCAACAUGGCCUGCAUCAAUCUGCGGUG
.........(((((....)...((((..((......))..))))))))((((..((((((......(..(((((((....)))))))..)))))))..))))(((((......))))).. ( -47.30)
>DroGri_CAF1 39317 120 - 1
UAAUGAGCAACCUGUGUGCUCAUGCUUGCAACAUUAUGUGGGAAGGGCGCCAAAUUGCCGACCCGAGUGCACCUCGAACUCCGAGUGCUCUGGCAAUAUGGCUUGCAUCAAUCUACGCUG
...(((((((.......((((...((..((......))..))..))))((((.((((((......((.((((.(((.....))))))).)))))))).)))))))).))).......... ( -39.40)
>DroEre_CAF1 38424 120 - 1
CAAUGAGCAUGCUGUCUGCUCAUGCUUGCAGCAUUACGUGGGUAGGGCGCCAAAUUGCCGGCCGGAGUGUACGUCCGACUCCGAGUGCCCCGGCAAUUUGGCCUGUAUCAAUCUGCGCUG
.....((((((((((..((....))..)))))))......((((.((.((((((((((((((((((((.........)))))).)....))))))))))))))).)))).......))). ( -53.20)
>DroMoj_CAF1 45990 120 - 1
UAAUGAGCAACCGGUGUGCUCAUGCUUGCAACAUUAUGUGGGUAGGGCGCCAAAUUGCCGGCCAGAGUGCACGUCAAACUCCGAGUGCGCUGGCAACUUGGCUUGCAUCAAUUUGCGCUG
......((((..(((((((((.((((..((......))..))))))))(((((.((((((((......((((.((.......)))))))))))))).)))))..)))))...)))).... ( -47.80)
>DroAna_CAF1 38677 120 - 1
CAACGAGCAGGCCGUCUGCUCGUGCUUGCAACAUUACGUGGGCAGGGCUCCCAACUGCCGGCCGGAGUGCACCUCGGACUCCGAGUGCCCCGGCAAUCUGGCCUGCAUCAAUCUGCGGUG
....(((((((((....((((.((((..(........)..))))))))............(((((.(.((((.((((...)))))))))))))).....))))))).))........... ( -52.80)
>consensus
CAAUGAGCAGCCUGUCUGCUCAUGCUUGCAACAUUACGUGGGUAGGGCGCCAAAUUGCCGACCGGAGUGCACCUCGAACUCCGAGUGCCCCGGCAAUUUGGCCUGCAUCAAUCUGCGCUG
.....(((.........((((.((((..(........)..))))))))((((.(((((((((((((((.........)))))).))....))))))).))))..(((......)))))). (-36.10 = -36.52 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:04 2006