Locus 1668

Sequence ID 2L_DroMel_CAF1
Location 4,521,499 – 4,521,618
Length 119
Max. P 0.877234
window2671

overview

Window 1

Location 4,521,499 – 4,521,618
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 87.79
Mean single sequence MFE -46.80
Consensus MFE -40.82
Energy contribution -40.52
Covariance contribution -0.30
Combinations/Pair 1.27
Mean z-score -1.95
Structure conservation index 0.87
SVM decision value 0.90
SVM RNA-class probability 0.877234
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4521499 119 - 22407834
CGUCCGGAAUGCGUGGUGAACAGUGAUUGCUCGCGCGACAAGUCGUGUGUCAACCAGAAAUGCGUGGACCCGUGUCCAGGUGUUUGUGGCUUGAACGCCCAGUGUCGUGUGUCCAAUCA
(..(((.....)).)..).....((((((..(((((((((....((((.(((((((.((((((.(((((....))))).)))))).))).))))))))....)))))))))..)))))) ( -48.70)
>DroPse_CAF1 37513 119 - 1
CGUCCCGAGUGCGUGGUUAAUAGCGAUUGCUCACGCGACAAGUCCUGCGUCAACCAGAAAUGCGUGGACCCUUGUCCUGGCGUUUGUGGCCUGAACGCCGAGUGUCGUGUGUCCAAUCA
...((((....)).))........(((((..(((((((((..((..((((((.(((.((((((..((((....))))..)))))).)))..)).)))).)).)))))))))..))))). ( -47.00)
>DroGri_CAF1 37775 119 - 1
CGUCCGGAAUGCGUGGUAAACAGUGAUUGUCCACGCGACAGAUCCUGCAUCAACCAGAAAUGUGCGGACCCUUGUCCGGGCGUUUGUGGCUUGAAUGCGGAAUGCCGCGUUUCCAAUCA
.....((((.((((((((......(((((((.....)))).)))((((((((((((.((((((.(((((....))))).)))))).))).))).))))))..))))))))))))..... ( -51.30)
>DroMoj_CAF1 45054 119 - 1
CGUCCAGAGUGUGUGGUGAACAGUGAUUGCCCACGCGACAGAUCUUGCAUCAACCAGAAAUGCGUGGACCCUUGUCCAGGUGUUUGUGGCUUGAAUGCAGAAUGCCGCGUGUCCAAUCA
((.(((.......))))).....((((((..((((((.((..(((.((((((((((.((((((.(((((....))))).)))))).))).))).))))))).)).))))))..)))))) ( -47.70)
>DroAna_CAF1 37031 119 - 1
CGUCCGGAGUGCGUGGUGAACAGUGAUUGCUCGCGCGACAAAUCCUGUGUCAACCAGAAGUGCGUGGACCCAUGUCCUGGCGUUUGUGGCUUGAAUGCCGAAUGUCGUGUGUCCAAUCA
(..(((.....)).)..).....((((((..(((((((((..((.....(((((((.((((((..((((....))))..)))))).))).)))).....)).)))))))))..)))))) ( -39.10)
>DroPer_CAF1 39161 119 - 1
CGUCCCGAGUGCGUGGUUAAUAGCGAUUGCUCACGCGACAAGUCCUGCGUCAACCAGAAAUGCGUGGACCCUUGUCCUGGCGUUUGUGGCCUGAACGCCGAGUGUCGUGUGUCCAAUCA
...((((....)).))........(((((..(((((((((..((..((((((.(((.((((((..((((....))))..)))))).)))..)).)))).)).)))))))))..))))). ( -47.00)
>consensus
CGUCCGGAGUGCGUGGUGAACAGUGAUUGCUCACGCGACAAAUCCUGCGUCAACCAGAAAUGCGUGGACCCUUGUCCUGGCGUUUGUGGCUUGAACGCCGAAUGUCGUGUGUCCAAUCA
........................(((((..(((((((((..(((.((((((((((.((((((..((((....))))..)))))).))).))).))))))).)))))))))..))))). (-40.82 = -40.52 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:08:00 2006