Locus 1664

Sequence ID 2L_DroMel_CAF1
Location 4,513,868 – 4,513,958
Length 90
Max. P 0.568604
window2664

overview

Window 4

Location 4,513,868 – 4,513,958
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 70.67
Mean single sequence MFE -23.47
Consensus MFE -10.69
Energy contribution -11.05
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -1.63
Structure conservation index 0.46
SVM decision value 0.07
SVM RNA-class probability 0.568604
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4513868 90 + 22407834
ACCUGGCGUUGGUUUUUUAUUCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-AGUACAAGUACA----AGUUAGGUGU
((((((((((((........)))))...((((((((.(..((((.........))))..)))))))))-.(((....))).----.))))))).. ( -27.40)
>DroPse_CAF1 29492 79 + 1
ACCUGGCGUUGGCCUUUGC-GGCUCUGAUUAAUCCAAUUGUGGUU--------------ACAGAUUAC-AGUACGUUUACGGUAUAGUUAGGUGU
(((((((....(((...((-((((.(((((...(((....)))..--------------...))))).-))).)))....)))...))))))).. ( -20.70)
>DroEre_CAF1 29071 89 + 1
ACCUGGCGUUGGUUUUUUG-UCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-AGUACAAGUACG----AGUUAGGUGU
(((((((.(((....((((-(..(((..((((((((.(..((((.........))))..)))))))))-))))))))..))----)))))))).. ( -26.80)
>DroYak_CAF1 18623 89 + 1
ACCUGGCGUUGGUUUUUUG-UCAGCUGAUUAAUCCGAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG-CGUACAAGUACA----AGUUAGGUGU
(((((((.(((....((((-(..(((((....((((.(..((((.........))))..)))))))))-)..)))))..))----)))))))).. ( -27.70)
>DroAna_CAF1 29427 78 + 1
ACCUGCUG---G----------CGCGGAUUAAUCCAGUUUCGCGUGUGGUAUUAUUGUAGCGGAUUAGAAGUACGAUUACG----AGUUAGGUGG
(((((((.---(----------((((((..........)))))))...(((..((((((.(......)...))))))))).----)).))))).. ( -17.50)
>DroPer_CAF1 31147 79 + 1
ACCUGGCGUUGGCCUUUGC-GGCUCUGAUUAAUCCAAUUGUGGUU--------------ACAGAUUAC-AGUACGUUUACGGUAUAGUUAGGUGU
(((((((....(((...((-((((.(((((...(((....)))..--------------...))))).-))).)))....)))...))))))).. ( -20.70)
>consensus
ACCUGGCGUUGGUUUUUUC_UCAGCUGAUUAAUCCAAUUGCAGUUGUGGUAUUAUUGUGGCGGAUUAG_AGUACAAGUACG____AGUUAGGUGU
(((((((......................((((((..........................))))))...(((....)))......))))))).. (-10.69 = -11.05 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:54 2006