Locus 1662

Sequence ID 2L_DroMel_CAF1
Location 4,491,465 – 4,491,579
Length 114
Max. P 0.889121
window2661

overview

Window 1

Location 4,491,465 – 4,491,579
Length 114
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 66.41
Mean single sequence MFE -20.63
Consensus MFE -6.11
Energy contribution -6.99
Covariance contribution 0.88
Combinations/Pair 1.36
Mean z-score -2.27
Structure conservation index 0.30
SVM decision value 0.95
SVM RNA-class probability 0.889121
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4491465 114 - 22407834
AAUUUGCCUUCAGAGCCAUCCUACUCGGCACCAAU------UCCAAAGCCUGGAAUCAUCAACGUUCCCUCGAUACCGGAACCUAUACCAUCAAUACCGCAAAAUCCCGUACAAGAGGUU
....((((....(((........)))))))...((------((((.....))))))...........((((..(((.(((........................))).)))...)))).. ( -18.46)
>DroPse_CAF1 6986 114 - 1
AAUAUACCAUCACAACCAUC------ACCACCGAUUUAUGUACCUACUCCCGGAGUGGUAAAUAUCCCUUCGGUGCCACAACCUUCUCCUGCGGCACCCCAACAACCUAUGUUCGAUGUC
................((((------......(((.....((((.((((...))))))))...))).....((((((.((.........)).))))))................)))).. ( -23.70)
>DroEre_CAF1 6810 114 - 1
AAUUUGCCCUCAGAGCCAUCUUAUCCGGCACCAAU------CCCAAAACCUGGAAUCAUCAAUAUUCCCUCAAUACCGCAACCUAUACCAUCAGCACCACAAAAUCCGGUGCAAGAGGUU
.......((((.(((((.........)))......------..........(((((.......)))))......................)).(((((.........)))))..)))).. ( -20.60)
>DroAna_CAF1 6844 114 - 1
AACAUUCCCUCGCAGCCAUC------ACCACCAAUCACGGUUCAAAAACCAGGAAUUAUAAAUAUUCCAUCGGUACCUCAGCCAACACCCUCCGCACCUCAGAACCCAAUACAGGAUGUU
(((((((....(....)...------............(((((........(((((.......)))))...(((......)))..................))))).......))))))) ( -16.70)
>DroPer_CAF1 7351 114 - 1
AAUAUACCAUCACAACCAUC------ACCACCGAUUUAUGUACCUACUCCCGGAGUGGUAAAUAUCCCUUCGGUGCCACAACCUUCUCCUGCGGCACCCCAACAACCUAUGUUCGAUGUC
................((((------......(((.....((((.((((...))))))))...))).....((((((.((.........)).))))))................)))).. ( -23.70)
>consensus
AAUAUACCAUCACAGCCAUC______ACCACCAAU____GUACCAAAACCCGGAAUCAUAAAUAUUCCCUCGGUACCACAACCUACACCAUCAGCACCCCAAAAACCUAUGCAAGAUGUU
.......((((........................................(((((.......)))))...(((((.................)))))................)))).. ( -6.11 =  -6.99 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:51 2006