| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 4,487,251 – 4,487,357 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 4,487,251 – 4,487,357 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 84.23 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -10.89 |
| Energy contribution | -11.67 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 4487251 106 - 22407834 GAAUAUUACCCAAAAGUCAAAAACCCCCUACGCCAAUAUAUAAAUGUUUCUCUUAACAUUUAAAAACCCCAAAACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((..(((......((((((((......)))))))).................((((.....))))...))))))).... ( -16.40) >DroSec_CAF1 2537 105 - 1 GAAUAUUACCCAAAAAUCAUAAACCCCCUGCGCCAAUUUAUAAAUGUUUAUCUUAACAUUUAGGAACCCCA-AACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((((((.(((((.((((((((......))))))))((....)).-...))))).))...(((....))))))))).... ( -20.20) >DroEre_CAF1 2561 99 - 1 GAAUAUCACCCAAAAGUUAUAAACUCCUUGACCCAAUAUAAAAAUAUUUCUUACAACAUUUAAGAAC-------CAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................(((((.((((((((..((((..((((((.......)))))).-------...))))..))))))......))))))).... ( -12.60) >consensus GAAUAUUACCCAAAAGUCAUAAACCCCCUGCGCCAAUAUAUAAAUGUUUCUCUUAACAUUUAAGAACCCCA_AACAAGUUUGCAUAUUGUAAUUAGGCAGGGCCCA .........................((((..(((......((((((((......)))))))).................((((.....))))...))))))).... (-10.89 = -11.67 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:50 2006