Locus 1657

Sequence ID 2L_DroMel_CAF1
Location 4,479,176 – 4,479,273
Length 97
Max. P 0.985012
window2653

overview

Window 3

Location 4,479,176 – 4,479,273
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 96.11
Mean single sequence MFE -18.00
Consensus MFE -15.90
Energy contribution -16.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.90
Structure conservation index 0.88
SVM decision value 1.99
SVM RNA-class probability 0.985012
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4479176 97 - 22407834
AAAA-GACGAAGCGAGAAUCGCAUGAUGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
....-.....((.(((((((((((.....))))((....))...............)).........((((((((((....))))))))))))))))) ( -18.70)
>DroSec_CAF1 15179 98 - 1
AAAAUGACGAAGCAAGAAUCGCAUCAAGAAUGCACGAAAGUAAUAUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
.........((((.......((((.....))))((....)).........)))).............((((((((((....))))))))))....... ( -16.50)
>DroSim_CAF1 15176 98 - 1
AAAAUGACGAAGCGAGAAUCGCAUCAAGAAUGCACGAAAGUAAUAUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
........((.(((.....))).)).(((((((((....)).............................(((((((....))))))))))))))... ( -18.70)
>DroEre_CAF1 16252 97 - 1
AAAU-GACGAAGCGAGAAUCGCACGAAGAAAGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
....-.....((.(((((..((((....(((..((....))..))).)).))...............((((((((((....))))))))))))))))) ( -17.40)
>DroYak_CAF1 15557 97 - 1
AAAA-GACGAAGCGAGAAUCGCAUGAAGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
....-.....((.(((((((((((.....))))((....))...............)).........((((((((((....))))))))))))))))) ( -18.70)
>consensus
AAAA_GACGAAGCGAGAAUCGCAUGAAGAAUGCACGAAAGUAAUUUAGUAGCUUAAGAAAAUAAUUUUAUUAAUUGUAAUAACGAUUAGUAUUCUCCU
.........((((.......((((.....))))((....)).........)))).............((((((((((....))))))))))....... (-15.90 = -16.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:43 2006