Locus 1650

Sequence ID 2L_DroMel_CAF1
Location 4,464,585 – 4,464,701
Length 116
Max. P 0.505595
window2644

overview

Window 4

Location 4,464,585 – 4,464,701
Length 116
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 81.20
Mean single sequence MFE -27.81
Consensus MFE -16.90
Energy contribution -16.52
Covariance contribution -0.38
Combinations/Pair 1.39
Mean z-score -1.63
Structure conservation index 0.61
SVM decision value -0.05
SVM RNA-class probability 0.505595
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4464585 116 + 22407834
UACGAGGAAGUUUCACCUUGAUAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCAAGGCCUUCGCUAUGAAGCAGCAC-CUCAAGCAGCACAGCC
...((((..(((.((((.(((.(((.......))).)))....)))))))((.(((....))).))...((((..((.(((....))).))..))))..)-)))..((......)). ( -25.30)
>DroSec_CAF1 647 116 + 1
UACGAGGAAGUUUCACCUUAAAAACCAUUUCCGUUCCCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCACGGCCUUUGCUCUCAAACAGCAC-CUCAAGGAACACAGCC
...((((........))))............(((((((.....)).))))).........(((((((....(((....)))...((((.......)))).-.....))))))).... ( -27.20)
>DroSim_CAF1 648 116 + 1
UACGAGGAAGUUUCACCUUAAAAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCACGGCCUUUGCUCUCAAGCAGCAC-CUCAAGGAACACAGCC
.....((..(((.((((..........................)))))))..))......(((((((....(((....)))..(((((....)))))...-.....))))))).... ( -26.37)
>DroEre_CAF1 1593 116 + 1
UACGAGGAAAUUUCACCUUCAAAACCAUCUCCGUUCUCACACUGGGGAACGACCAUUCAAGUGUUCCCACUGCUUGAAGGCCUUUGCUCUUAACCAGCAC-CUCAAGGUACAUAUUC
...((((........(((((((.........(((((((......)))))))........((((....))))..)))))))....((((.......)))))-)))............. ( -28.40)
>DroYak_CAF1 675 116 + 1
UACGAGAAAAUUUCACCUUCAAAACCAUAUUCGUUCUCACACGGGCGAACGUCCAUUCCAGUGUCCCCACUGCCCCAAGGCCUUUGCCCUGAAGCAGCAC-CUCAAGGAACACAGUC
...(((((.........................)))))....((((....))))......((((.....((((..((.(((....))).))..))))..(-(....)).)))).... ( -23.41)
>DroAna_CAF1 1617 116 + 1
UGAAAGAAAAUCUGGUUAUGAGGAGCACGUUCGCACUCAUACAGGGGAGCGACCUUACAAGUGUUCCUUCUGCUCCAAGGCCUUUGCGC-AAAGCAGCACUCUCAAGGGCCAUCUUC
...((((.....(((.((.(((((((((..((((.(((......))).))))........))))))))).))..))).((((((((.((-......)).....)))))))).)))). ( -36.20)
>consensus
UACGAGGAAAUUUCACCUUAAAAACCAUUUCCGUUCUCACACUGGUGAACGACCAUUCAAGUGUUCCCACUGCCCCAAGGCCUUUGCUCUCAAGCAGCAC_CUCAAGGAACACAGCC
...((((........))))............(((((((.....)).))))).........(((((((....(((....)))....((.........))........))))))).... (-16.90 = -16.52 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:34 2006