| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 496,016 – 496,106 |
| Length | 90 |
| Max. P | 0.540360 |
| Location | 496,016 – 496,106 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 81.20 |
| Mean single sequence MFE | -26.80 |
| Consensus MFE | -17.59 |
| Energy contribution | -17.82 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 496016 90 - 22407834 GUUCUAA----------UUUUCGGCUAGCGAUAGCCAUCGCCUAUCGGCGAGAUUGGGAAGUUUCGAGGAGGCGCUGACAGAGAUUUAUGGUUAUGGCAU .......----------..........((.(((((((((((((.((..(((((((....))))))).))))))).............)))))))).)).. ( -26.91) >DroSec_CAF1 41701 90 - 1 GUUCUAA----------UUUUCGGCUAGCGAUAGCCAUCGCCUAUCGGCAAGAUUGGGAAGUUUCGAGGAGGCGCUGACAGAGAUUUAUGGCUAUGGCAU .......----------..........((.((((((((.(((....))).(((((.(..(((.((.....)).)))..)...))))))))))))).)).. ( -25.90) >DroSim_CAF1 41869 90 - 1 GUUCUAA----------UUUUCGGCUAGCGAUAGCCAUCGCCUAUCGGCGAGAUUGGGAAGUUUCGAGGAGGCGCUGACAGAGAUUUAUGGCUAUGGCAU .......----------..........((.(((((((((((((.((..(((((((....))))))).))))))).............)))))))).)).. ( -29.31) >DroEre_CAF1 42486 84 - 1 GUUCUAA----------UUUUCGGCUGGCGAUAGCCAUCGCCUAUCGGCGAGAUUGGGCAGUUUCGUGGAGGCGCUGACAGAGAUUUAU------GGCAU ((..(((----------.(((((((((....)))))..((((..((.((((((((....)))))))).))))))......)))).))).------.)).. ( -29.70) >DroYak_CAF1 42186 84 - 1 GUUCUAA----------UUUUCGGCUAGCGAUAGCCAUCGCCUAUCGGCGAGAUUGGGAAGUUUCGAGGAGGCGCUGACAGAGAUUUAU------GGCAU ((..(((----------.(((((((((....)))))..(((((.((..(((((((....))))))).)))))))......)))).))).------.)).. ( -28.50) >DroAna_CAF1 53164 85 - 1 GUUCUAUUUGUUAUUUUUUUUCGGCCUCCGAUGAUUAUCGUCUA------AGAUUCGUCGGUUUCCA---GGCCCUGACAGAGAUUUAUGGU------GU ...((((.....((((((((..((((((((((((..(((.....------.)))))))))).....)---))))..)).))))))..)))).------.. ( -20.50) >consensus GUUCUAA__________UUUUCGGCUAGCGAUAGCCAUCGCCUAUCGGCGAGAUUGGGAAGUUUCGAGGAGGCGCUGACAGAGAUUUAUGG____GGCAU ..................(((((((((....)))))..(((((.....(((((((....)))))))...)))))......))))................ (-17.59 = -17.82 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:48 2006