Locus 1649

Sequence ID 2L_DroMel_CAF1
Location 4,462,324 – 4,462,444
Length 120
Max. P 0.724616
window2643

overview

Window 3

Location 4,462,324 – 4,462,444
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 77.22
Mean single sequence MFE -39.55
Consensus MFE -22.12
Energy contribution -21.07
Covariance contribution -1.05
Combinations/Pair 1.46
Mean z-score -1.77
Structure conservation index 0.56
SVM decision value 0.41
SVM RNA-class probability 0.724616
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4462324 120 + 22407834
CCUCCACAGCUUGGGUACUAUUUGCAUUUGCAGCAAUACGCUGCCGGCCUUGUCGCAUGUGCCCAGAACGUUGGCCAGUGUCCACAGGCAACUGCGCUUGAGGCGUUCGGCCUUGCCAUC
...........(((((((....(((....(((((.....))))).(((...)))))).)))))))(((((((((((((((((....))).)))).)))...)))))))(((...)))... ( -43.90)
>DroPse_CAF1 2608 120 + 1
UUUCCACAAUUUGGGGACUAUCUGCAUUUGCAGCAGUGUUUUGGCUGCCUUCUCGCAAGUGGCCAACAUGUUGGCCAGUGUCCAAAGACAGCUUCGUUUUAGCCGCUCCUCCUUUCCAUC
............(((((((..((((....)))).))).....(((((......((.((((((((((....))))))..((((....))))))))))...)))))....))))........ ( -33.80)
>DroGri_CAF1 3217 120 + 1
UUUCCAUAAUUUGGUUGCCAAUUGCAUUUGAAGCAAUGUUUUGGCCGACUUGCUGCAUGUGGCUAUAAUGUUGGCCAAUGUCCAGAGGCAACUGCGCUUCAAGCGCGGCUCCUGACUAUU
...((.......(((((((.(((((.......)))))...((((((((((((..((.....))..))).)))))))))........)))))))((((.....))))))............ ( -40.20)
>DroYak_CAF1 2368 120 + 1
CCUCCACAACUUGGGUACUAGUUGCAUUUGCAGCAAAAUCUUGCCGGCCUUAUCGCAUGUGGCCAGAAUGUUGGCCAGUGUCCACAGGCAACUGCGCUUGAGGCGUUCGGCCUUGCCAUC
.............((((...(((((....)))))........((((((((((.((((..(((((((....))))))).((((....))))..))))..))))))...))))..))))... ( -42.00)
>DroMoj_CAF1 2693 120 + 1
UUUCCACAAUUUGCUGGCCAAUUGCAUUUGCAGCAACAUGCUGGCCGACUUGCUGCACGUGGCCAAAAUGUUGGCCAGCGUCCAAAGGCAACUGCGCUUCAGUCGCGGCUCCUGAUUGUC
.....((((((....((((....(((.((((......((((((((((((..((((....))))......))))))))))))......)))).)))((.......))))))...)))))). ( -43.60)
>DroPer_CAF1 2602 120 + 1
UUUCCACAAUUUGGGGACUAUCUGCAUUUGCAGCAGUGUUUUGGCUGCCUUCUCGCAAGUGGCCAACAUGUUGGCCAGUGUCCAAAGACAGCUUCGUUUUAGCCGCUCCUCCUUUCCAUC
............(((((((..((((....)))).))).....(((((......((.((((((((((....))))))..((((....))))))))))...)))))....))))........ ( -33.80)
>consensus
UUUCCACAAUUUGGGGACUAUUUGCAUUUGCAGCAAUAUUUUGGCCGCCUUGUCGCAUGUGGCCAAAAUGUUGGCCAGUGUCCAAAGGCAACUGCGCUUCAGGCGCUCCUCCUUACCAUC
...........(((.......((((.......))))......(((.........((((.(((((((....)))))))))))...(((((......))))).)))...........))).. (-22.12 = -21.07 +  -1.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:32 2006