Locus 1647

Sequence ID 2L_DroMel_CAF1
Location 4,453,587 – 4,453,689
Length 102
Max. P 0.530501
window2641

overview

Window 1

Location 4,453,587 – 4,453,689
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 72.38
Mean single sequence MFE -41.67
Consensus MFE -16.07
Energy contribution -16.79
Covariance contribution 0.73
Combinations/Pair 1.24
Mean z-score -1.85
Structure conservation index 0.39
SVM decision value -0.01
SVM RNA-class probability 0.530501
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4453587 102 + 22407834
GAUCGAAG---CACCGGC---CUGCUCGUAGUAACCUUGCCAGGCCUGGUAUCCCUGCCAAUAGGUGC---UGGUGGGGUCGUAGUACUGCGAGUAGUCGGUGCCACCUG---------C
.......(---(((((((---.(((((((((((((((..((((((((((((....))))...)))).)---)))..)))).....)))))))))))))))))))......---------. ( -53.60)
>DroVir_CAF1 3639 114 + 1
AAUUGAAGGAGCAGCGCC---CUGCUCAUAAUAGCCCUGCCAGGCAUUAUAGCCCUGCCAGUAGGUGC---UGGUUGGAUCGUAAUAUUGCGAGUAAUCGGCGCCGCCAGCACCGGUCGA
........((((((....---))))))......((((((.(((((......).)))).)))..(((((---((((.((.(((((....)))))((.....)).))))))))))))))... ( -42.50)
>DroGri_CAF1 4191 114 + 1
AAUCGAUGGAGCCGCUGC---CUGUUCGUAGUAUCCCUGCCAGGCAUUGUAGCCCUGCCAAUAGCUGCUGCUGCUGGGAUCAUAAUACUGCGCAUAAUC---CCCACCAGCGCCAGUUGA
.......((.((..((((---(((...((((.....))))))))))..)..))))......((((((.(((((.((((.....................---)))).))))).)))))). ( -35.40)
>DroEre_CAF1 4072 102 + 1
GAUCGAGG---CACCGGC---CUGCUCGUAGUAACCCUGCCAGGCCUGGUAUCCCUGCCAAUAGGUGC---UGGUUGGGUCGUAGUACUGCGAAUAGUCAGUACCACCUC---------C
....((((---....(((---(((...((((.....))))))))))(((((....)))))...(((((---((..((..(((((....))))).))..))))))).))))---------. ( -42.50)
>DroAna_CAF1 4138 111 + 1
AAUUGAGG---GACCGCCGCUUUGCUCAUAGUAUCCCUGCCAAGCAUUGUAGCCCUGCCAGUAGGUGC---UGGUGGGGUCAUAGUAUUGAGAGUAAUCCGUACCGCUGC---UGGUCGA
........---((((((.((.((((((...(((....)))(((..(((((..(((..(((((....))---)))..)))..))))).))).))))))........)).))---.)))).. ( -38.20)
>DroMoj_CAF1 3793 114 + 1
UAUUGAAGGCGCUGCGCC---UUGUUCAUAAUAGCCCUGCCAAGCAUUGUAGCCCUGCCAGUAGGUGC---UGGUCGGGUCGUAAUAUUGCGAAUAAUCAGUGCCGCCUGCACUUGUUGA
...((.(((((..((((.---((((((.(((((((........)).(((..((((.((((((....))---)))).))))..)))))))).))))))...))))))))).))........ ( -37.80)
>consensus
AAUCGAAG___CACCGCC___CUGCUCAUAGUAACCCUGCCAGGCAUUGUAGCCCUGCCAAUAGGUGC___UGGUGGGGUCGUAAUACUGCGAAUAAUCAGUGCCACCUG_____GU_GA
.....................((((((.(((((((((..(((.(((.......((((....)))))))...)))..)))).....))))).))))))....................... (-16.07 = -16.79 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:30 2006