Locus 1645

Sequence ID 2L_DroMel_CAF1
Location 4,439,178 – 4,439,276
Length 98
Max. P 0.851860
window2639

overview

Window 9

Location 4,439,178 – 4,439,276
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 95.64
Mean single sequence MFE -23.60
Consensus MFE -19.74
Energy contribution -19.66
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.84
SVM decision value 0.79
SVM RNA-class probability 0.851860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4439178 98 - 22407834
CAAGAAUAAACCAUCCAAACAUCCUGAAGCAUCCGCGCAUCCAAACAUCCAAGC-GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC
(((((((((.((((((((.......((.((....((((..............))-))....)).)).......)))).....))))))))))))).... ( -23.78)
>DroSec_CAF1 44553 98 - 1
CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCGAGC-GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC
(((((((((.((((..............((....((((.((.........))))-))....))..(((......))).....))))))))))))).... ( -23.50)
>DroSim_CAF1 48864 98 - 1
CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCGAGC-GCCCAGGCAUCCAACUACUUGGCCAUUGUGGUUGUUCUUGGCUC
(((((((((.((((..............((....((((.((.........))))-))....))..((((....)))).....))))))))))))).... ( -23.30)
>DroEre_CAF1 46892 99 - 1
CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGAAGCCCGGGCAUCCAUCUACUUGGCCAUUGUGGUUGUACUUGGCUG
((((....((((((..........(((.((....))))).........(((((.((...((....))..)).))))).....))))))...)))).... ( -19.30)
>DroYak_CAF1 45412 99 - 1
CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGUAGCCCGGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUG
(((((((((.((((..........(((.((....))))).........((((((((...((....))..)))))))).....))))))))))))).... ( -28.10)
>consensus
CAAGAAUAAACCAUCCAAACAUCCUGCAGCAUCCGCGCAUCCAAACAUCCAAGC_GCCCAGGCAUCCAUCUACUUGGCCAUUGUGGUUGUUCUUGGCUC
(((((((((.(((...........(((.((....)))))..........(((...(((.((...........)).)))..))))))))))))))).... (-19.74 = -19.66 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:28 2006