Locus 1640

Sequence ID 2L_DroMel_CAF1
Location 4,417,727 – 4,417,828
Length 101
Max. P 0.989650
window2630

overview

Window 0

Location 4,417,727 – 4,417,828
Length 101
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.04
Mean single sequence MFE -37.96
Consensus MFE -31.38
Energy contribution -31.30
Covariance contribution -0.08
Combinations/Pair 1.24
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 2.17
SVM RNA-class probability 0.989650
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 4417727 101 - 22407834
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUUGAGCCGAGCUGGGGGAUCCUUGAAAGCAUUGCCAGCCGGAGG-GUUUUCCCUGCUUGACUUGACUG
.....((((((((.((((.....))(..((((((.....(((.(((((.((...((....))..)).))))))))...-..))))))..))).)))))))). ( -36.90)
>DroSec_CAF1 23225 99 - 1
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGACCCUUGAAAGCAUCGCUAGCCGGAGG-GUUUCCCCAGCUUGACUUG--UG
..(((((((((((...((.....)).((((((((.....(((.((((((((...((....))..)))))))))))...-.))))))))))))))))))--). ( -43.60)
>DroSim_CAF1 24732 99 - 1
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGAUCCUUGAAAGCAUUGCCAGCCGGAGG-GUUUCCCCAGCUUGACUUG--UG
..(((((((((((...((.....)).((((((((.....(((.((((((((...((....))..)))))))))))...-.))))))))))))))))))--). ( -43.90)
>DroEre_CAF1 23297 100 - 1
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCUGACCUGGUGGAUCCUUGAAAACAUAGCCCGCCGGAGGGGAUUCCUCUGCUUGACUUG--UG
..(((((((((((....(((...((.((((..((.....))..)))).))......((....))......)))(((((.....)))))))))))))))--). ( -33.90)
>DroYak_CAF1 23641 100 - 1
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCUGACCUGGCGGAUCCUUGAAAGCAAUGCCAGCCGGAGGGGUUUUCUUAGCUUGACUUG--UG
..(((((((((((....((.((...((.(((.((.....))..))).))..))))..((((((....((....))....))))))...))))))))))--). ( -31.50)
>consensus
AAACAGGUCAGGUGAAUGGCAUACAGUGGGGAAGUGGAGCCGAGCUGGCGGAUCCUUGAAAGCAUUGCCAGCCGGAGG_GUUUCCCCAGCUUGACUUG__UG
...((((((((((...((.....))..(((((((.....(((.(((((((...............)))))))))).....))))))).)))))))))).... (-31.38 = -31.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:07:20 2006